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Set and get taxon names

Source: R/classification.R, R/getter_setter_s3_generics.R, R/taxon.R, and 1 more
tax_name.Rd

Set and get the taxon names in objects that have them, such as taxon objects. Note that this is not the same as adding vector names with names.

Usage

# S3 method for taxa_classification
tax_name(x)

# S3 method for taxa_classification
tax_name(x) <- value

tax_name(x)

tax_name(x) <- value

# S3 method for taxa_taxon
tax_name(x)

# S3 method for taxa_taxon
tax_name(x) <- value

# S3 method for taxa_taxonomy
tax_name(x)

# S3 method for taxa_taxonomy
tax_name(x) <- value

Arguments

x

An object with taxon names.

value

The taxon names to set. Inputs will be coerced into a character vector.

Examples

x <- taxon(name = c('Homo sapiens', 'Bacillus', 'Ascomycota', 'Ericaceae'),
           rank = c('species', 'genus', 'phylum', 'family'),
           id = taxon_id(c('9606', '1386', '4890', '4345'), db = 'ncbi'),
           auth = c('Linnaeus, 1758', 'Cohn 1872', NA, 'Juss., 1789'))

tax_name(x)
#> [1] "Homo sapiens" "Bacillus"     "Ascomycota"   "Ericaceae"   
tax_name(x) <- tolower(tax_name(x))
tax_name(x)[1] <- 'Billy'