Retrieve the taxonomic hierarchies from local database
Source:R/ap_classification.R
classification.Rd
This function is equivalent to the taxize::classification()
function,
except that it uses a local database (so is much faster). The output is
identical to taxize::classification()
Arguments
- x
character) Vector of taxon keys for the given database
- db
character) The database to search, one of ncbi, itis, gbif, col, or wfo
- verbose
(logical) Print verbose messages
- ...
Additional arguments passed to database specific classification functions.
Value
list of data.frames with the columns: name, rank, and id. This is
exactly equivalent to the output of taxize::classification()