Function reference • taxizedb

All functions

children(): Retrieve immediate descendents of a taxon

classification(): Retrieve the taxonomic hierarchies from local database

db_download_ncbi() db_download_itis() db_download_tpl() db_download_wfo() db_download_col() db_download_gbif() db_download_wikidata(): Download taxonomic databases

db_load_itis() db_load_tpl() db_load_col() db_load_gbif() db_load_ncbi() db_load_wikidata(): Load taxonomic databases - NO LONGER NEEDED

db_path(): database path

downstream(): Retrieve all taxa descending from a vector of taxa

name2taxid(): Convert species names to taxon IDs

sql_collect(): Query and get data back into a data.frame

src_itis() src_tpl() src_col() src_gbif() src_ncbi() src_wikidata() src_wfo(): src - dplyr src objects

taxa_at(): Get taxa at specific scientific ranks

taxid2name(): Convert taxon IDs to scientific names

taxid2rank(): Convert taxon IDs to scientific ranks

taxizedb-package taxizedb: taxizedb

tdb_cache: Caching