Convert taxon IDs to scientific names — taxid2name • taxizedb

Convert taxon IDs to scientific names

Usage

taxid2name(x, db = "ncbi", verbose = TRUE, warn = TRUE, ...)

Arguments

x: (character) Vector of taxon keys for the given database
db: (character) The database to search, one of ncbi, itis, gbif, col, wfo, or tpl
verbose: (logical) Print verbose messages
warn: (logical) If TRUE, raise a warning if any taxon IDs can not be found
...: Additional arguments passed to database specific classification functions

Value

character vector of scientific names

Examples

if (FALSE) {
taxid2name(c(3702, 9606))
taxid2name(c(154395, 154357, 23041, 154396), db = "itis")
taxid2name(c('wfo-0000541830', 'wfo-0000291463'), db = "wfo")
taxid2name("wfo-7000000057", db="wfo")
taxid2name(2877951, db="gbif")
taxid2name(c(2877951, 5386), db="gbif")
taxid2name(c(3960765, 3953606, 3953010), db="col")
taxid2name(c("kew-2614538", "kew-2895433", "kew-2615007"), db="tpl")
}