Convert taxon IDs to scientific ranks — taxid2rank • taxizedb

Convert taxon IDs to scientific ranks

Usage

taxid2rank(x, db = "ncbi", verbose = TRUE, warn = TRUE, ...)

Arguments

x: (character) Vector of taxon keys (name or id) for the given database
db: (character) The database to search, one of ncbi, itis, gbif, col, or wfo
verbose: (logical) Print verbose messages
warn: (logical) If TRUE, raise a warning if any taxon IDs can not be found
...: Additional arguments passed to database specific classification functions

Value

character vector of ranks in the same order as the inputs

Examples

if (FALSE) { # \dontrun{
taxid2rank(c(3701, 9606))
taxid2rank(c(154395, 154357, 23041, 154396), db = "itis")
taxid2rank(c('wfo-4000032377', 'wfo-0000541830'), db = "wfo")
taxid2rank("wfo-7000000057", db = "wfo")
taxid2rank(2877951, db = "gbif")
taxid2rank(c(2877951, 5386), db = "gbif")
taxid2rank(c("C66T4", "C7ZVH", "TP"), db = "col")
} # }