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Parses a BEAST2 state .xml.state output file to get only the operators acceptances

Source: R/parse_beast_state.R
parse_beast_state_operators.Rd

Parses a BEAST2 state .xml.state output file to get only the operators acceptances

Usage

parse_beast_state_operators(
  state_filename = get_tracerer_path("beast2_example_output.xml.state"),
  filename = "deprecated"
)

Arguments

state_filename

name of the BEAST2 state .xml.state output file

filename

deprecated name of the BEAST2 .xml.state output file, use state_filename instead

Value

data frame with all the operators' success rates

Author

Richèl J.C. Bilderbeek

Examples

parse_beast_state_operators(
  state_filename = get_tracerer_path("beast2_example_output.xml.state")
)
#>            operator    p accept reject acceptFC rejectFC rejectIv rejectOp
#> 1      treeScaler.t 0.50    184    186        0        0        0        0
#> 2  treeRootScaler.t 0.50    144    224        0        0       63       63
#> 3 UniformOperator.t  NaN   2219   1667        0        0        0        0
#> 4    SubtreeSlide.t 1.00    409   1442        0        0      690      690
#> 5          narrow.t  NaN    962    972        0        0        0        0
#> 6            wide.t  NaN     50    349        0        0      236      236
#> 7   WilsonBalding.t  NaN     31    365        0        0      230      230
#> 8 BirthRateScaler.t 0.75    347     73        0        0        0        0
#> 9 DeathRateScaler.t 0.75    329     48        0        0        3        3