Print subtrees with tips added.

Once a tip has been added to the tree, print the newick-formatted subtree to which the tip was added.

Usage

echo_subtree(tree, mrca_list, tip)

Arguments

tree

Tree to which the tip will be added; object of type phylo

mrca_list

Vector of taxa. The added tip will subtend the MRCA of these taxa

tip

Taxon which will be added to the tree.

Value

tree subtree to which tip was added

Examples

mrca_list <- c("Ursus_arctos", "Ursus_spelaeus", "Ursus_americanus")
tree <- text_placr(tree, mrca_df)
#> Placing tip Kretzoiarctos_beatrix
#> via relatives Indarctos_arctoides, Indarctos_vireti
#>  at node 25
#> Placing tip Ursus_abstrusus
#> via relatives Ursus_arctos, Ursus_spelaeus, Ursus_americanus
#>  at node 30
echo_sub <- echo_subtree(tree, mrca_list, "Ursus_abstrusus")