Function reference • treestartr

All functions

absent_tippr(): Add tips to tree via user input

bears: bears

dataf_parsr(): Detect file format of taxon file

echo_rb(): Print RevBayes-formatted clade constriants.

echo_subtree(): Print subtrees with tips added.

fileformat(): Utility function to check if file is a csv or tsv.

genera_strippr(): Check if tip is on tree

get_found(): Get dataframe of tips that do not have congeners on tree.

get_lost(): Determine if a tip is present on a tree

make_absentdf(): Determine which tips are not on the tree, and get their genera.

make_treedf(): Determine which tips are on the tree, and get their genera.

present_tippr(): Add tips to the tree based on taxonomy.

rand_absent_tippr(): Random addition of taxa

taxon_testr(): Utility function to check taxon_names in parsed data file

text_placr(): Add tips to tree via taxon list

treestartr treestartr-package: treestartr: A package for generating reasonable starting trees for phylogenetic analysis.