Connect to a Virtuoso Server over ODBC
Usage
vos_connect(
driver = NULL,
uid = "dba",
pwd = "dba",
host = "localhost",
port = "1111",
system_odbcinst = find_odbcinst(),
local_odbcinst = odbcinst_path()
)
Arguments
- driver
Name of the Driver line in the ODBC configuration
- uid
User id. Defaults to "dba"
- pwd
Password. Defaults to "dba"
- host
IP address of the Virtuoso Server
- port
Port used by Virtuoso. Defaults to the Virtuoso standard port, 1111
- system_odbcinst
Path to the system
odbcinst.ini
file. (Does not require write access.) Default will attempt to find the file for your system.- local_odbcinst
Path to the local odbcinst we should use.
Value
a DBI connection to the Virtuoso database. This can
be passed to additional virtuoso functions such as vos_import()
or vos_query()
, and can also be used as a standard DBI or dplyr
database backend.
Details
Default parameters are appropriate for the automatic installer provided by the package and for the default settings typically used by local Virtuoso installers. Adjust these only if you are connecting to a remote virtuoso server that is not controlled from the R package.
Examples
status <- vos_status()
#> virtuoso isn't running.
# \donttest{
if(has_virtuoso()){
## start up
vos_start()
con <- vos_connect()
}
#> Warning: Exiting, virtuoso template not found... is virtuoso installed?
#> PROCESS 'virtuoso-t', running, pid 2521.
#> Server is now starting up, this may take a few seconds...
#> virtuoso isn't running.
#> Warning: could not automatically locate virtodbc.so
#> Error in base::tryCatch(base::withCallingHandlers({ NULL base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/tmp/RtmpaXILXQ/callr-fun-85953f183"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, quote = TRUE), file = "/tmp/RtmpaXILXQ/callr-res-8c257c07", compress = FALSE) base::flush(base::stdout()) base::flush(base::stderr()) NULL base::invisible()}, error = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2)) e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } base::saveRDS(base::list("error", e2, e), file = base::paste0("/tmp/RtmpaXILXQ/callr-res-8c257c07", ".error")) }}, interrupt = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2)) e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } base::saveRDS(base::list("error", e2, e), file = base::paste0("/tmp/RtmpaXILXQ/callr-res-8c257c07", ".error")) }}, callr_message = function(e) { base::try(base::signalCondition(e))}), error = function(e) { NULL if (FALSE) { base::try(base::stop(e)) } else { base::invisible() }}, interrupt = function(e) { NULL if (FALSE) { e } else { base::invisible() }}): ! ODBC failed with error 00000 from [unixODBC][Driver Manager].
#> ✖ Can't open lib 'virtodbc.so' : file not found
#> ℹ From nanodbc/nanodbc.cpp:1150.
# }