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Compose a Response Matrix of All Odor Receptors

Source: R/create_door_database.R
create_door_database.Rd

computes the complete response model for all receptors in the database (calls model_response for all receptors). Overwrites response_matrix, door_response_matrix_non_normalized and door_excluded_data.

Usage

create_door_database(tag = door_default_values("tag"),
  select.MDValue = door_default_values("select.MDValue"),
  overlapValues = door_default_values("overlapValues"), ...)

Arguments

tag

character string, format for rownames, possibilities: "InChIKey", CAS", "CID", "Name"

select.MDValue

a numeric, threshold on the MD, this is used to reject studies that do not align sufficiently well to the response model

overlapValues

numeric, a criterion using to refuse a data set that has not enough overlap value.

...

pass more parameters to model_response

See also

model_response

Author

Shouwen Ma <shouwen.ma@uni-konstanz.de>

Daniel Münch <daniel.muench@uni-konstanz.de>

Examples

if (FALSE) {
# load DoOR data
library(DoOR.data)
load_door_data()

# create a new consensus matrix
create_door_database()
}