Skip to contents

dplot_response_profile

Source: R/dplot_response_profile.R
dplot_response_profile.Rd

create a barplot of a DoOR response profile

Usage

dplot_response_profile(receptor,
  response_matrix = door_default_values("door_response_matrix"),
  odor_data = door_default_values("odor"), tag = door_default_values("tag"),
  colored = TRUE, colors = door_default_values("colors"), limits,
  zero = door_default_values("zero"),
  scalebar = door_default_values("scalebar"), base_size = 12)

Arguments

receptor

character, receptor name, any of colnames(door_response_matrix)

response_matrix

a DoOR door_response_matrix

odor_data

data frame, contains the odorant information.

tag

character, chemical identifier for annotation

colored

logical, color code the bars according to the response value?

colors

character vector, a vector of 5 colors (2 for values < 0, 1 value for 0 and 3 values > 0)

limits

numeric of length 2, the limits for the colorscale and the x axis, global range of data will be used if empty

zero

character, the odorant response that is set to 0, defaults to "SFR"

scalebar

logical, add or suppress scalebars

base_size

numeric, the base font size for the ggplot2 plot

Value

ggplot2 plot

Author

Daniel Münch <daniel.muench@uni-konstanz.de>

Examples

# load data
library(DoOR.data)
data(door_response_matrix)

# plot with default parameters
dplot_response_profile("Or22a", door_response_matrix)


# plot wit odorant names
dplot_response_profile("Or22a", door_response_matrix, tag = "Name")