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model_response_seq

Source: R/model_response_seq.R
model_response_seq.Rd

generates a model response and merge data in given sequence

Usage

model_response_seq(data, SEQ,
  overlapValues = door_default_values("overlapValues"),
  select.MDValue = door_default_values("select.MDValue"), strict = TRUE,
  plot = FALSE)

Arguments

data

data frame, odorant response data, e.g. Or22a.

SEQ

character vector, containing the names of studies indicating given sequence for merging data.

overlapValues

minimum overlap between studies to perfom a merge

select.MDValue

the minimum mean distance between studies to perfom a merge

strict

logical, if TRUE merging a permutation will be stopped once a single merge has a mean distance above select.MDValue

plot

logical

Details

# model_response_seq.R: #################

# merges studies in a given sequence (determined by the user or by exhaustive enumeration and choosing the optimal sequence)

# input parameters: ####################

# data : data frame, odorant response data for a given receptor, e.g. Or22a # SEQ : character vector, contains the names of studies that measured this receptor in a specific order (the merging sequence)

# output is a numeric vector: response values

Author

Shouwen Ma <shouwen.ma@uni-konstanz.de>

Examples

# load data
library(DoOR.data)
data(Or35a)
data(door_response_range)

# specify a sequence of merging
SEQ <- c("Hallem.2006.EN","Kreher.2008.EN","Hallem.2006.EN")

# perform the merging
selected_merg <- model_response_seq(Or35a, SEQ = SEQ, plot = TRUE)
#> Warning: selfStart initializing functions should have a final '...' argument since R 4.1.0
#> Warning: selfStart initializing functions should have a final '...' argument since R 4.1.0
#> Warning: selfStart initializing functions should have a final '...' argument since R 4.1.0
#> Warning: selfStart initializing functions should have a final '...' argument since R 4.1.0