get_flat_trees

extract a single multiPhylo object containing all trees in the nexml

Usage

get_flat_trees(nexml)

Arguments

nexml

a representation of the nexml object from which the data is to be retrieved

Value

a multiPhylo object (list of ape::phylo objects). See details.

Details

Note that this method collapses any hierarchical structure that may have been present as multiple trees nodes in the original nexml (though such a feature is rarely used). To preserve that structure, use get_trees instead.

See also

get_trees get_trees get_item

Examples

comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_flat_trees(nex)
#> 1 phylogenetic tree