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extract a phylogenetic tree from the nexml

Source: R/get_trees.R
get_trees.Rd

extract a phylogenetic tree from the nexml

Usage

get_trees(nexml)

Arguments

nexml

a representation of the nexml object from which the data is to be retrieved

Value

an ape::phylo tree, if only one tree is represented. Otherwise returns a list of lists of multiphylo trees. To consistently receive the list of lists format (preserving the hierarchical nature of the nexml), use get_trees_list instead.

See also

get_trees get_flat_trees get_item

Examples

comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
nex <- nexml_read(comp_analysis)
get_trees(nex)
#> 
#> Phylogenetic tree with 10 tips and 9 internal nodes.
#> 
#> Tip labels:
#>   taxon_8, taxon_9, taxon_10, taxon_1, taxon_2, taxon_3, ...
#> 
#> Rooted; includes branch lengths.