This data.frame is very useful for selecting datasets fastly and
independent on APIs of UCSC Xena Hubs.
Examples
data(XenaData)
str(XenaData)
#> tibble [2,486 × 17] (S3: tbl_df/tbl/data.frame)
#> $ XenaHosts : chr [1:2486] "https://ucscpublic.xenahubs.net" "https://ucscpublic.xenahubs.net" "https://ucscpublic.xenahubs.net" "https://ucscpublic.xenahubs.net" ...
#> $ XenaHostNames : Named chr [1:2486] "publicHub" "publicHub" "publicHub" "publicHub" ...
#> ..- attr(*, "names")= chr [1:2486] "https://ucscpublic.xenahubs.net" "https://ucscpublic.xenahubs.net" "https://ucscpublic.xenahubs.net" "https://ucscpublic.xenahubs.net" ...
#> $ XenaCohorts : chr [1:2486] "Breast Cancer Cell Lines (Neve 2006)" "Breast Cancer Cell Lines (Neve 2006)" "Glioma (Kotliarov 2006)" "Glioma (Kotliarov 2006)" ...
#> $ XenaDatasets : chr [1:2486] "ucsfNeve_public/ucsfNeveExp_genomicMatrix" "ucsfNeve_public/ucsfNeve_public_clinicalMatrix" "kotliarov2006_public/kotliarov2006_genomicMatrix" "kotliarov2006_public/kotliarov2006_public_clinicalMatrix" ...
#> $ SampleCount : int [1:2486] 51 57 194 194 383 383 59 62 30 60 ...
#> $ DataSubtype : chr [1:2486] "gene expression" "phenotype" "copy number" "phenotype" ...
#> $ Label : chr [1:2486] "Neve Cell Line gene expression" "Phenotypes" "Kotliarov Glioma CGH" "Phenotypes" ...
#> $ Type : chr [1:2486] "genomicMatrix" "clinicalMatrix" "genomicMatrix" "clinicalMatrix" ...
#> $ AnatomicalOrigin: chr [1:2486] "Breast" "" "Brain" "" ...
#> $ SampleType : chr [1:2486] "cell line" "" "tumor" "" ...
#> $ Tags : chr [1:2486] "cell lines,breast cancer" "cancer" "cancer,neural" "cancer" ...
#> $ ProbeMap : chr [1:2486] "probeMap/affyU133_ucscGenomeBrowser_hg18.probeMap" NA "probeMap/probesAffy100K" NA ...
#> $ LongTitle : chr [1:2486] "Cell Line Gene Expression (Neve et al. Cancer Cell 2006)" NA "Glioma CGH (Kotliarov et al. 2006)" NA ...
#> $ Citation : chr [1:2486] "Cancer Cell. 2006 Dec;10(6):515-27." NA "Cancer Res. 2006 Oct 1;66(19):9428-36." NA ...
#> $ Version : chr [1:2486] "2011-11-01" "2011-11-11" "2011-11-01" "2011-11-11" ...
#> $ Unit : chr [1:2486] NA NA NA NA ...
#> $ Platform : chr [1:2486] NA NA NA NA ...