UCSCXenaTools 1.4.7 2021-09-15

  • 3 datasets were added into XenaData.
  • Added support for gene symbol checking and data cache in fetch().

UCSCXenaTools 1.4.6 2021-07-17

  • Added code to check hiplot server status.
  • Fixed check warnings to follow CRAN policy (#36).

UCSCXenaTools 1.4.5 2021-05-27

  • Fixed the download bug for pan-cancer data hub due to unvalid URL. url_encode() is added internally to transform reserved characters (/ is kept).
  • Fixed the download bug because UCSCXenaShiny mutate the result of XenaQuery() and thus change the column number. This bug will not affect XenaTools itself.

UCSCXenaTools 1.4.4 2021-04-06

  • Fixed the download bug because UCSCXenaShiny mutate the result of XenaQuery() and thus change the column order. This bug will not affect XenaTools itself.

UCSCXenaTools 1.4.3 2021-03-22

  • Implemented using hiplot for fetch() functions.

UCSCXenaTools 1.4.1 (1.4.2) Unreleased

  • Removed unpublished Xena hub TDI.

UCSCXenaTools 1.4.0 2021-01-19

  • Supported downloading data from Hiplot mirror site (https://xena.hiplot.com.cn/).

UCSCXenaTools 1.3.6 2020-11-23

  • Fixed a bug about try times for data download.
  • Make sure a message instead of an error will be returned if download process failed.

UCSCXenaTools 1.3.5 2020-11-14

  • Added TDI data Hub containing 9 new datasets.

UCSCXenaTools 1.3.4 2020-09-30

  • Updated UCSC Xena datasets, now 1670 datasets available.

UCSCXenaTools 1.3.3 2020-08-05

UCSCXenaTools 1.3.2 2020-07-14

  • Fixed bug about an error happened when querying mutation data.
  • Dropped “Treehouse” data hub.
  • Updated code to update Xena hub datasets.

UCSCXenaTools 1.3.1 2020-03-18

  • Added max_try option in query and download functions, so they can handle internet connection issue better

UCSCXenaTools 1.3.0 2020-02-26

  • Added a new data hub: PCAWG Xena Hub (#24).
  • Added a new data hub: Kids First Xena Hub (#24).
  • Updated data update function more robustly.