UCSCXenaTools 1.6.0
- Totally 2511 datasets are included in the current list.
- Single cell hub was found disabled.
- GDC hub was completely updated. The old GDC hub has been renamed to gdcHubV18.
UCSCXenaTools 1.5.0
- Bugs fixed.
- Removed useless action or check config files.
- Removed the
XenaShiny()function to reduce the dependencies. - Updated XenaData. Only minor datasets change found from previous data release.
- Hiplot mirror is down, so we removed its usage in documentation (not delete internal code).
- Added two new queries from xenaPython.
UCSCXenaTools 1.4.7
CRAN release: 2021-09-15
- 3 datasets were added into
XenaData.
[1] "TCGA_survival_data_2.txt"
[2] "clinical_CellLinePolyA_21.06_2021-06-15.tsv"
[3] "CellLinePolyA_21.06_hugo_log2tpm_58581genes_2021-06-15.tsv"- Added support for gene symbol checking and data cache in
fetch().
UCSCXenaTools 1.4.6
CRAN release: 2021-07-17
- Added code to check hiplot server status.
- Fixed check warnings to follow CRAN policy (#36).
UCSCXenaTools 1.4.5
CRAN release: 2021-05-27
- Fixed the download bug for pan-cancer data hub due to unvalid URL.
url_encode()is added internally to transform reserved characters (/is kept). - Fixed the download bug because UCSCXenaShiny mutate the result of
XenaQuery()and thus change the column number. This bug will not affect XenaTools itself.
UCSCXenaTools 1.4.4
CRAN release: 2021-04-06
- Fixed the download bug because UCSCXenaShiny mutate the result of
XenaQuery()and thus change the column order. This bug will not affect XenaTools itself.
UCSCXenaTools 1.4.0
CRAN release: 2021-01-19
- Supported downloading data from Hiplot mirror site (
https://xena.hiplot.com.cn/).
UCSCXenaTools 1.3.6
CRAN release: 2020-11-23
- Fixed a bug about try times for data download.
- Make sure a message instead of an error will be returned if download process failed.
UCSCXenaTools 1.3.4
CRAN release: 2020-09-30
- Updated UCSC Xena datasets, now 1670 datasets available.
UCSCXenaTools 1.3.3
CRAN release: 2020-08-05
- Added
fetch_sparse_values()function. - Updated treehouse URL.
- Added treehouse datasets.
UCSCXenaTools 1.3.2
CRAN release: 2020-07-14
- Fixed bug about an error happened when querying mutation data.
- Dropped “Treehouse” data hub.
- Updated code to update Xena hub datasets.