
Package index
- 
          XenaData
- Xena Hub Information
- 
          XenaScan()
- Scan all rows according to user input by a regular expression
- 
          XenaGenerate()
- Generate and Subset a XenaHub Object from 'XenaData'
- 
          XenaFilter()
- Filter a XenaHub Object
- 
          XenaBrowse()
- View Info of Dataset or Cohort at UCSC Xena Website Using Web browser
- 
          XenaQuery()
- Query URL of Datasets before Downloading
- 
          XenaDownload()
- Download Datasets from UCSC Xena Hubs
- 
          XenaPrepare()
- Prepare (Load) Downloaded Datasets to R
- 
          fetch()fetch_dense_values()fetch_sparse_values()fetch_dataset_samples()fetch_dataset_identifiers()has_probeMap()
- Fetch Data from UCSC Xena Hosts
- 
          downloadTCGA()
- Easily Download TCGA Data by Several Options
- 
          getTCGAdata()
- Get TCGA Common Data Sets by Project ID and Property
- 
          availTCGA()
- Get or Check TCGA Available ProjectID, DataType and FileType
- 
          showTCGA()
- Show TCGA data structure by Project ID or ALL
- 
          XenaDataUpdate()
- Get or Update Newest Data Information of UCSC Xena Data Hubs
- 
          hosts()
- Get hosts of XenaHub object
- 
          cohorts()
- Get cohorts of XenaHub object
- 
          datasets()
- Get datasets of XenaHub object
- 
          samples()
- Get Samples of a XenaHub object according to 'by' and 'how' action arguments
- 
          fetch()fetch_dense_values()fetch_sparse_values()fetch_dataset_samples()fetch_dataset_identifiers()has_probeMap()
- Fetch Data from UCSC Xena Hosts
- 
          XenaQueryProbeMap()
- Query ProbeMap URL of Datasets
- 
          xena_default_hosts()
- UCSC Xena Default Hosts
- 
          to_snake()
- Convert camel case to snake case
- 
          UCSCXenaTools-dynamic.p_all_cohorts.p_all_datasets.p_all_datasets_n.p_all_field_metadata.p_cohort_samples.p_cohort_summary.p_dataset_fetch.p_dataset_field.p_dataset_field_examples.p_dataset_field_n.p_dataset_gene_probe_avg.p_dataset_gene_probes_values.p_dataset_list.p_dataset_metadata.p_dataset_probe_signature.p_dataset_probe_values.p_dataset_samples.p_dataset_samples_ndense_matrix.p_dataset_sources.p_dataset_status.p_datasets_null_rows.p_feature_list.p_field_codes.p_field_metadata.p_gene_transcripts.p_match_fields.p_probe_count.p_probemap_list.p_ref_gene_exons.p_ref_gene_position.p_ref_gene_range.p_segment_data_examples.p_segmented_data_range.p_sparse_data.p_sparse_data_examples.p_sparse_data_match_field.p_sparse_data_match_field_slow.p_sparse_data_match_partial_field.p_sparse_data_range.p_transcript_expression.xq_all_cohorts.xq_all_datasets.xq_all_datasets_n.xq_all_field_metadata.xq_cohort_samples.xq_cohort_summary.xq_dataset_fetch.xq_dataset_field.xq_dataset_field_examples.xq_dataset_field_n.xq_dataset_gene_probe_avg.xq_dataset_gene_probes_values.xq_dataset_list.xq_dataset_metadata.xq_dataset_probe_signature.xq_dataset_probe_values.xq_dataset_samples.xq_dataset_samples_ndense_matrix.xq_dataset_sources.xq_dataset_status.xq_datasets_null_rows.xq_feature_list.xq_field_codes.xq_field_metadata.xq_gene_transcripts.xq_match_fields.xq_probe_count.xq_probemap_list.xq_ref_gene_exons.xq_ref_gene_position.xq_ref_gene_range.xq_segment_data_examples.xq_segmented_data_range.xq_sparse_data.xq_sparse_data_examples.xq_sparse_data_match_field.xq_sparse_data_match_field_slow.xq_sparse_data_match_partial_field.xq_sparse_data_range.xq_transcript_expression
- UCSC Xena Dynamic Objects
- 
          XenaHub-class.XenaHub
- Class XenaHub
- 
          XenaHub()
- Generate a XenaHub Object