Standard dataset query and download pipelineSelect, query, download and load datasets. |
|
---|---|
Xena Hub Information |
|
Scan all rows according to user input by a regular expression |
|
Generate and Subset a XenaHub Object from 'XenaData' |
|
Filter a XenaHub Object |
|
View Info of Dataset or Cohort at UCSC Xena Website Using Web browser |
|
Query URL of Datasets before Downloading |
|
Download Datasets from UCSC Xena Hubs |
|
Prepare (Load) Downloaded Datasets to R |
|
Download a subset of datasetDownload a subset of dataset for target analysis. |
|
|
Fetch Data from UCSC Xena Hosts |
One-click download functionDownload datasets by setting options in one function. |
|
Easily Download TCGA Data by Several Options |
|
Get TCGA Common Data Sets by Project ID and Property |
|
Get or Check TCGA Available ProjectID, DataType and FileType |
|
Show TCGA data structure by Project ID or ALL |
|
UtilityUseful functions. |
|
Get or Update Newest Data Information of UCSC Xena Data Hubs |
|
Xena Shiny App |
|
Get hosts of XenaHub object |
|
Get cohorts of XenaHub object |
|
Get datasets of XenaHub object |
|
Get Samples of a XenaHub object according to 'by' and 'how' action arguments |
|
|
Fetch Data from UCSC Xena Hosts |
Query ProbeMap URL of Datasets |
|
HelpersHelper functions. |
|
UCSC Xena Default Hosts |
|
Convert camel case to snake case |
|
ClassClass and related function. |
|
Class XenaHub |
|
Generate a XenaHub Object |