Package index
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XenaData - Xena Hub Information
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XenaScan() - Scan all rows according to user input by a regular expression
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XenaGenerate() - Generate and Subset a XenaHub Object from 'XenaData'
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XenaFilter() - Filter a XenaHub Object
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XenaBrowse() - View Info of Dataset or Cohort at UCSC Xena Website Using Web browser
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XenaQuery() - Query URL of Datasets before Downloading
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XenaDownload() - Download Datasets from UCSC Xena Hubs
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XenaPrepare() - Prepare (Load) Downloaded Datasets to R
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fetch()fetch_dense_values()fetch_sparse_values()fetch_dataset_samples()fetch_dataset_identifiers()has_probeMap() - Fetch Data from UCSC Xena Hosts
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downloadTCGA() - Easily Download TCGA Data by Several Options
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getTCGAdata() - Get TCGA Common Data Sets by Project ID and Property
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availTCGA() - Get or Check TCGA Available ProjectID, DataType and FileType
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showTCGA() - Show TCGA data structure by Project ID or ALL
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XenaDataUpdate() - Get or Update Newest Data Information of UCSC Xena Data Hubs
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hosts() - Get hosts of XenaHub object
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cohorts() - Get cohorts of XenaHub object
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datasets() - Get datasets of XenaHub object
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samples() - Get Samples of a XenaHub object according to 'by' and 'how' action arguments
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fetch()fetch_dense_values()fetch_sparse_values()fetch_dataset_samples()fetch_dataset_identifiers()has_probeMap() - Fetch Data from UCSC Xena Hosts
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XenaQueryProbeMap() - Query ProbeMap URL of Datasets
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xena_default_hosts() - UCSC Xena Default Hosts
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to_snake() - Convert camel case to snake case
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UCSCXenaTools-dynamic.p_all_cohorts.p_all_datasets.p_all_datasets_n.p_all_field_metadata.p_cohort_samples.p_cohort_summary.p_dataset_fetch.p_dataset_field.p_dataset_field_examples.p_dataset_field_n.p_dataset_gene_probe_avg.p_dataset_gene_probes_values.p_dataset_list.p_dataset_metadata.p_dataset_probe_signature.p_dataset_probe_values.p_dataset_samples.p_dataset_samples_ndense_matrix.p_dataset_sources.p_dataset_status.p_datasets_null_rows.p_feature_list.p_field_codes.p_field_metadata.p_gene_transcripts.p_match_fields.p_probe_count.p_probemap_list.p_ref_gene_exons.p_ref_gene_position.p_ref_gene_range.p_segment_data_examples.p_segmented_data_range.p_sparse_data.p_sparse_data_examples.p_sparse_data_match_field.p_sparse_data_match_field_slow.p_sparse_data_match_partial_field.p_sparse_data_range.p_transcript_expression.xq_all_cohorts.xq_all_datasets.xq_all_datasets_n.xq_all_field_metadata.xq_cohort_samples.xq_cohort_summary.xq_dataset_fetch.xq_dataset_field.xq_dataset_field_examples.xq_dataset_field_n.xq_dataset_gene_probe_avg.xq_dataset_gene_probes_values.xq_dataset_list.xq_dataset_metadata.xq_dataset_probe_signature.xq_dataset_probe_values.xq_dataset_samples.xq_dataset_samples_ndense_matrix.xq_dataset_sources.xq_dataset_status.xq_datasets_null_rows.xq_feature_list.xq_field_codes.xq_field_metadata.xq_gene_transcripts.xq_match_fields.xq_probe_count.xq_probemap_list.xq_ref_gene_exons.xq_ref_gene_position.xq_ref_gene_range.xq_segment_data_examples.xq_segmented_data_range.xq_sparse_data.xq_sparse_data_examples.xq_sparse_data_match_field.xq_sparse_data_match_field_slow.xq_sparse_data_match_partial_field.xq_sparse_data_range.xq_transcript_expression - UCSC Xena Dynamic Objects
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XenaHub-class.XenaHub - Class XenaHub
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XenaHub() - Generate a XenaHub Object