When you want to query just data for several genes/samples from UCSC Xena datasets, a better way
is to use these fetch_ functions instead of downloading a whole dataset. Details about functions
please see the following sections.
Usage
fetch(host, dataset)
fetch_dense_values(
host,
dataset,
identifiers = NULL,
samples = NULL,
check = TRUE,
use_probeMap = FALSE,
time_limit = 30
)
fetch_sparse_values(host, dataset, genes, samples = NULL, time_limit = 30)
fetch_dataset_samples(host, dataset, limit = NULL)
fetch_dataset_identifiers(host, dataset)
has_probeMap(host, dataset, return_url = FALSE)Arguments
- host
a UCSC Xena host, like "https://toil.xenahubs.net". All available hosts can be printed by
xena_default_hosts().- dataset
a UCSC Xena dataset, like "tcga_RSEM_gene_tpm". All available datasets can be printed by running
XenaData$XenaDatasetsor obtained from UCSC Xena datapages.- identifiers
Identifiers could be probe (like "ENSG00000000419.12"), gene (like "TP53") etc.. If it is
NULL, all identifiers in the dataset will be used.- samples
ID of samples, like "TCGA-02-0047-01". If it is
NULL, all samples in the dataset will be used. However, it is better to download the whole datasets if you query many samples and genes.- check
if
TRUE, check whether specifiedidentifiersandsamplesexist the dataset (all failed items will be filtered out). However, ifFALSE, the code is much faster.- use_probeMap
if
TRUE, will check if the dataset has ProbeMap firstly. When the dataset you want to query has a identifier-to-gene mapping, identifiers can be gene symbols even the identifiers of dataset are probes or others.- time_limit
time limit for getting response in seconds.
- genes
gene names.
- limit
number of samples, if
NULL, return all samples.- return_url
if
TRUE, returns the info of probeMap instead of a logical value when the result exists.
Details
There are three primary data types: dense matrix (samples by probes (or say identifiers)), sparse (sample, position, variant), and segmented (sample, position, value).
Dense matrices can be genotypic or phenotypic, it is a sample-by-identifiers matrix. Phenotypic matrices have associated field metadata (descriptive names, codes, etc.). Genotypic matricies may have an associated probeMap, which maps probes to genomic locations. If a matrix has hugo probeMap, the probes themselves are gene names. Otherwise, a probeMap is used to map a gene location to a set of probes.
Functions
fetch_dense_values(): fetches values from a dense matrix.fetch_sparse_values(): fetches values from a sparsedata.frame.fetch_dataset_samples(): fetches samples from a datasetfetch_dataset_identifiers(): fetches identifies from a dataset.has_probeMap(): checks if a dataset has ProbeMap.
Examples
library(UCSCXenaTools)
host <- "https://toil.xenahubs.net"
dataset <- "tcga_RSEM_gene_tpm"
samples <- c("TCGA-02-0047-01", "TCGA-02-0055-01", "TCGA-02-2483-01", "TCGA-02-2485-01")
probes <- c("ENSG00000282740.1", "ENSG00000000005.5", "ENSG00000000419.12")
genes <- c("TP53", "RB1", "PIK3CA")
# \donttest{
# Fetch samples
fetch_dataset_samples(host, dataset, 2)
#> [1] "TCGA-19-1787-01" "TCGA-S9-A7J2-01"
# Fetch identifiers
fetch_dataset_identifiers(host, dataset)
#> [1] "ENSG00000000003.14" "ENSG00000000005.5" "ENSG00000000419.12"
#> [4] "ENSG00000000457.13" "ENSG00000000460.16" "ENSG00000000938.12"
#> [7] "ENSG00000000971.15" "ENSG00000001036.13" "ENSG00000001084.10"
#> [10] "ENSG00000001167.14" "ENSG00000001460.17" "ENSG00000001461.16"
#> [13] "ENSG00000001497.16" "ENSG00000001561.6" "ENSG00000001617.11"
#> [16] "ENSG00000001626.14" "ENSG00000001629.9" "ENSG00000001630.15"
#> [19] "ENSG00000001631.14" "ENSG00000002016.16" "ENSG00000002079.12"
#> [22] "ENSG00000002330.13" "ENSG00000002549.12" "ENSG00000002586.17"
#> [25] "ENSG00000002587.9" "ENSG00000002726.19" "ENSG00000002745.12"
#> [28] "ENSG00000002746.14" "ENSG00000002822.15" "ENSG00000002834.17"
#> [31] "ENSG00000002919.14" "ENSG00000002933.7" "ENSG00000003056.7"
#> [34] "ENSG00000003096.13" "ENSG00000003137.8" "ENSG00000003147.17"
#> [37] "ENSG00000003249.13" "ENSG00000003393.14" "ENSG00000003400.14"
#> [40] "ENSG00000003402.19" "ENSG00000003436.14" "ENSG00000003509.15"
#> [43] "ENSG00000003756.16" "ENSG00000003987.13" "ENSG00000003989.16"
#> [46] "ENSG00000004059.10" "ENSG00000004139.13" "ENSG00000004142.11"
#> [49] "ENSG00000004399.12" "ENSG00000004455.16" "ENSG00000004468.12"
#> [52] "ENSG00000004478.7" "ENSG00000004487.15" "ENSG00000004534.14"
#> [55] "ENSG00000004660.14" "ENSG00000004700.15" "ENSG00000004766.15"
#> [58] "ENSG00000004776.11" "ENSG00000004777.18" "ENSG00000004779.9"
#> [61] "ENSG00000004799.7" "ENSG00000004809.13" "ENSG00000004838.13"
#> [64] "ENSG00000004846.16" "ENSG00000004848.6" "ENSG00000004864.13"
#> [67] "ENSG00000004866.18" "ENSG00000004897.11" "ENSG00000004939.13"
#> [70] "ENSG00000004948.13" "ENSG00000004961.14" "ENSG00000004975.11"
#> [73] "ENSG00000005001.9" "ENSG00000005007.12" "ENSG00000005020.12"
#> [76] "ENSG00000005022.5" "ENSG00000005059.15" "ENSG00000005073.5"
#> [79] "ENSG00000005075.15" "ENSG00000005100.12" "ENSG00000005102.12"
#> [82] "ENSG00000005108.15" "ENSG00000005156.11" "ENSG00000005175.9"
#> [85] "ENSG00000005187.11" "ENSG00000005189.19" "ENSG00000005194.14"
#> [88] "ENSG00000005206.16" "ENSG00000005238.19" "ENSG00000005243.9"
#> [91] "ENSG00000005249.12" "ENSG00000005302.17" "ENSG00000005339.12"
#> [94] "ENSG00000005379.15" "ENSG00000005381.7" "ENSG00000005421.8"
#> [97] "ENSG00000005436.13" "ENSG00000005448.16" "ENSG00000005469.11"
#> [100] "ENSG00000005471.15" "ENSG00000005483.19" "ENSG00000005486.16"
#> [103] "ENSG00000005513.9" "ENSG00000005700.14" "ENSG00000005801.16"
#> [106] "ENSG00000005810.17" "ENSG00000005812.10" "ENSG00000005844.17"
#> [109] "ENSG00000005882.11" "ENSG00000005884.17" "ENSG00000005889.15"
#> [112] "ENSG00000005893.15" "ENSG00000005961.17" "ENSG00000005981.12"
#> [115] "ENSG00000006007.11" "ENSG00000006015.17" "ENSG00000006016.10"
#> [118] "ENSG00000006025.11" "ENSG00000006042.11" "ENSG00000006047.12"
#> [121] "ENSG00000006059.3" "ENSG00000006062.13" "ENSG00000006071.11"
#> [124] "ENSG00000006116.3" "ENSG00000006118.14" "ENSG00000006125.16"
#> [127] "ENSG00000006128.11" "ENSG00000006194.9" "ENSG00000006210.6"
#> [130] "ENSG00000006282.19" "ENSG00000006283.17" "ENSG00000006327.13"
#> [133] "ENSG00000006377.10" "ENSG00000006432.15" "ENSG00000006451.7"
#> [136] "ENSG00000006453.13" "ENSG00000006459.10" "ENSG00000006468.13"
#> [139] "ENSG00000006530.15" "ENSG00000006534.15" "ENSG00000006555.10"
#> [142] "ENSG00000006576.16" "ENSG00000006606.8" "ENSG00000006607.13"
#> [145] "ENSG00000006611.15" "ENSG00000006625.17" "ENSG00000006634.7"
#> [148] "ENSG00000006638.11" "ENSG00000006652.13" "ENSG00000006659.12"
#> [151] "ENSG00000006695.10" "ENSG00000006704.10" "ENSG00000006712.14"
#> [154] "ENSG00000006715.15" "ENSG00000006740.16" "ENSG00000006744.18"
#> [157] "ENSG00000006747.14" "ENSG00000006756.15" "ENSG00000006757.11"
#> [160] "ENSG00000006788.12" "ENSG00000006831.9" "ENSG00000006837.11"
#> [163] "ENSG00000007001.12" "ENSG00000007038.10" "ENSG00000007047.14"
#> [166] "ENSG00000007062.11" "ENSG00000007080.10" "ENSG00000007129.17"
#> [169] "ENSG00000007168.12" "ENSG00000007171.16" "ENSG00000007174.17"
#> [172] "ENSG00000007202.14" "ENSG00000007216.14" "ENSG00000007237.18"
#> [175] "ENSG00000007255.10" "ENSG00000007264.13" "ENSG00000007306.14"
#> [178] "ENSG00000007312.12" "ENSG00000007314.11" "ENSG00000007341.18"
#> [181] "ENSG00000007350.16" "ENSG00000007372.20" "ENSG00000007376.7"
#> [184] "ENSG00000007384.15" "ENSG00000007392.16" "ENSG00000007402.11"
#> [187] "ENSG00000007516.13" "ENSG00000007520.3" "ENSG00000007541.14"
#> [190] "ENSG00000007545.15" "ENSG00000007866.18" "ENSG00000007908.15"
#> [193] "ENSG00000007923.15" "ENSG00000007933.12" "ENSG00000007944.14"
#> [196] "ENSG00000007952.17" "ENSG00000007968.6" "ENSG00000008018.8"
#> [199] "ENSG00000008056.12" "ENSG00000008083.13" "ENSG00000008086.10"
#> [202] "ENSG00000008118.9" "ENSG00000008128.22" "ENSG00000008130.15"
#> [205] "ENSG00000008196.12" "ENSG00000008197.4" "ENSG00000008226.19"
#> [208] "ENSG00000008256.15" "ENSG00000008277.14" "ENSG00000008282.7"
#> [211] "ENSG00000008283.15" "ENSG00000008294.20" "ENSG00000008300.14"
#> [214] "ENSG00000008311.14" "ENSG00000008323.15" "ENSG00000008324.10"
#> [217] "ENSG00000008382.15" "ENSG00000008394.12" "ENSG00000008405.11"
#> [220] "ENSG00000008438.4" "ENSG00000008441.16" "ENSG00000008513.14"
#> [223] "ENSG00000008516.16" "ENSG00000008517.16" "ENSG00000008710.17"
#> [226] "ENSG00000008735.13" "ENSG00000008838.17" "ENSG00000008853.16"
#> [229] "ENSG00000008869.11" "ENSG00000008952.16" "ENSG00000008988.9"
#> [232] "ENSG00000009307.15" "ENSG00000009335.17" "ENSG00000009413.15"
#> [235] "ENSG00000009694.13" "ENSG00000009709.11" "ENSG00000009724.16"
#> [238] "ENSG00000009765.14" "ENSG00000009780.15" "ENSG00000009790.14"
#> [241] "ENSG00000009830.11" "ENSG00000009844.15" "ENSG00000009950.15"
#> [244] "ENSG00000009954.10" "ENSG00000010017.12" "ENSG00000010030.13"
#> [247] "ENSG00000010072.15" "ENSG00000010165.19" "ENSG00000010219.13"
#> [250] "ENSG00000010244.16" "ENSG00000010256.10" "ENSG00000010270.13"
#> [253] "ENSG00000010278.11" "ENSG00000010282.14" "ENSG00000010292.12"
#> [256] "ENSG00000010295.19" "ENSG00000010310.8" "ENSG00000010318.19"
#> [259] "ENSG00000010319.6" "ENSG00000010322.15" "ENSG00000010327.10"
#> [262] "ENSG00000010361.13" "ENSG00000010379.15" "ENSG00000010404.17"
#> [265] "ENSG00000010438.16" "ENSG00000010539.11" "ENSG00000010610.9"
#> [268] "ENSG00000010626.14" "ENSG00000010671.15" "ENSG00000010704.18"
#> [271] "ENSG00000010803.16" "ENSG00000010810.17" "ENSG00000010818.8"
#> [274] "ENSG00000010932.15" "ENSG00000011007.12" "ENSG00000011009.10"
#> [277] "ENSG00000011021.21" "ENSG00000011028.13" "ENSG00000011052.21"
#> [280] "ENSG00000011083.8" "ENSG00000011105.11" "ENSG00000011114.14"
#> [283] "ENSG00000011132.11" "ENSG00000011143.16" "ENSG00000011198.7"
#> [286] "ENSG00000011201.10" "ENSG00000011243.17" "ENSG00000011258.15"
#> [289] "ENSG00000011260.13" "ENSG00000011275.18" "ENSG00000011295.15"
#> [292] "ENSG00000011304.16" "ENSG00000011332.19" "ENSG00000011347.9"
#> [295] "ENSG00000011376.9" "ENSG00000011405.13" "ENSG00000011422.11"
#> [298] "ENSG00000011426.10" "ENSG00000011451.17" "ENSG00000011454.16"
#> [301] "ENSG00000011465.16" "ENSG00000011478.11" "ENSG00000011485.14"
#> [304] "ENSG00000011523.13" "ENSG00000011566.14" "ENSG00000011590.13"
#> [307] "ENSG00000011600.11" "ENSG00000011638.10" "ENSG00000011677.12"
#> [310] "ENSG00000012048.19" "ENSG00000012061.15" "ENSG00000012124.14"
#> [313] "ENSG00000012171.17" "ENSG00000012174.11" "ENSG00000012211.12"
#> [316] "ENSG00000012223.12" "ENSG00000012232.8" "ENSG00000012504.13"
#> [319] "ENSG00000012660.13" "ENSG00000012779.10" "ENSG00000012817.15"
#> [322] "ENSG00000012822.15" "ENSG00000012963.13" "ENSG00000012983.11"
#> [325] "ENSG00000013016.14" "ENSG00000013275.7" "ENSG00000013288.8"
#> [328] "ENSG00000013293.5" "ENSG00000013297.10" "ENSG00000013306.15"
#> [331] "ENSG00000013364.18" "ENSG00000013374.15" "ENSG00000013375.15"
#> [334] "ENSG00000013392.7" "ENSG00000013441.15" "ENSG00000013503.9"
#> [337] "ENSG00000013523.9" "ENSG00000013561.17" "ENSG00000013563.13"
#> [340] "ENSG00000013573.16" "ENSG00000013583.8" "ENSG00000013588.5"
#> [343] "ENSG00000013619.13" "ENSG00000013725.14" "ENSG00000013810.18"
#> [346] "ENSG00000014123.9" "ENSG00000014138.8" "ENSG00000014164.6"
#> [349] "ENSG00000014216.15" "ENSG00000014257.15" "ENSG00000014641.17"
#> [352] "ENSG00000014824.13" "ENSG00000014914.19" "ENSG00000014919.12"
#> [355] "ENSG00000015133.18" "ENSG00000015153.14" "ENSG00000015171.18"
#> [358] "ENSG00000015285.10" "ENSG00000015413.9" "ENSG00000015475.18"
#> [361] "ENSG00000015479.17" "ENSG00000015520.14" "ENSG00000015532.9"
#> [364] "ENSG00000015568.12" "ENSG00000015592.16" "ENSG00000015676.17"
#> [367] "ENSG00000016082.14" "ENSG00000016391.10" "ENSG00000016402.12"
#> [370] "ENSG00000016490.15" "ENSG00000016602.9" "ENSG00000016864.16"
#> [373] "ENSG00000017260.19" "ENSG00000017427.15" "ENSG00000017483.14"
#> [376] "ENSG00000017797.11" "ENSG00000018189.12" "ENSG00000018236.14"
#> [379] "ENSG00000018280.16" "ENSG00000018408.14" "ENSG00000018510.12"
#> [382] "ENSG00000018607.6" "ENSG00000018610.13" "ENSG00000018625.14"
#> [385] "ENSG00000018699.11" "ENSG00000018869.16" "ENSG00000019102.11"
#> [388] "ENSG00000019144.16" "ENSG00000019169.10" "ENSG00000019186.9"
#> [391] "ENSG00000019485.12" "ENSG00000019505.7" "ENSG00000019549.8"
#> [394] "ENSG00000019582.14" "ENSG00000019991.15" "ENSG00000019995.6"
#> [397] "ENSG00000020129.15" "ENSG00000020181.17" "ENSG00000020219.9"
#> [400] "ENSG00000020256.19" "ENSG00000020426.10" "ENSG00000020577.13"
#> [403] "ENSG00000020633.18" "ENSG00000020922.12" "ENSG00000021300.13"
#> [406] "ENSG00000021355.12" "ENSG00000021461.16" "ENSG00000021488.12"
#> [409] "ENSG00000021574.11" "ENSG00000021645.17" "ENSG00000021762.19"
#> [412] "ENSG00000021776.10" "ENSG00000021826.14" "ENSG00000021852.12"
#> [415] "ENSG00000022267.16" "ENSG00000022277.12" "ENSG00000022355.14"
#> [418] "ENSG00000022556.15" "ENSG00000022567.9" "ENSG00000022840.15"
#> [421] "ENSG00000022976.15" "ENSG00000023041.11" "ENSG00000023171.14"
#> [424] "ENSG00000023191.16" "ENSG00000023228.13" "ENSG00000023287.12"
#> [427] "ENSG00000023318.7" "ENSG00000023330.14" "ENSG00000023445.13"
#> [430] "ENSG00000023516.8" "ENSG00000023572.8" "ENSG00000023608.4"
#> [433] "ENSG00000023697.12" "ENSG00000023734.10" "ENSG00000023839.10"
#> [436] "ENSG00000023892.10" "ENSG00000023902.13" "ENSG00000023909.9"
#> [439] "ENSG00000024048.10" "ENSG00000024422.11" "ENSG00000024526.16"
#> [442] "ENSG00000024862.16" "ENSG00000025039.14" "ENSG00000025156.12"
#> [445] "ENSG00000025293.15" "ENSG00000025423.11" "ENSG00000025434.18"
#> [448] "ENSG00000025708.12" "ENSG00000025770.18" "ENSG00000025772.7"
#> [451] "ENSG00000025796.13" "ENSG00000025800.13" "ENSG00000026025.13"
#> [454] "ENSG00000026036.20" "ENSG00000026103.19" "ENSG00000026297.15"
#> [457] "ENSG00000026508.16" "ENSG00000026559.13" "ENSG00000026652.13"
#> [460] "ENSG00000026751.16" "ENSG00000026950.16" "ENSG00000027001.9"
#> [463] "ENSG00000027075.13" "ENSG00000027644.4" "ENSG00000027697.12"
#> [466] "ENSG00000027847.13" "ENSG00000027869.11" "ENSG00000028116.16"
#> [469] "ENSG00000028137.16" "ENSG00000028203.17" "ENSG00000028277.20"
#> [472] "ENSG00000028310.17" "ENSG00000028528.14" "ENSG00000028839.9"
#> [475] "ENSG00000029153.14" "ENSG00000029363.15" "ENSG00000029364.11"
#> [478] "ENSG00000029534.19" "ENSG00000029559.6" "ENSG00000029639.10"
#> [481] "ENSG00000029725.16" "ENSG00000029993.14" "ENSG00000030066.13"
#> [484] "ENSG00000030110.12" "ENSG00000030304.12" "ENSG00000030419.16"
#> [487] "ENSG00000030582.16" "ENSG00000031003.10" "ENSG00000031081.10"
#> [490] "ENSG00000031691.6" "ENSG00000031698.12" "ENSG00000031823.14"
#> [493] "ENSG00000032219.18" "ENSG00000032389.12" "ENSG00000032444.15"
#> [496] "ENSG00000032742.17" "ENSG00000033011.11" "ENSG00000033030.13"
#> [499] "ENSG00000033050.7" "ENSG00000033100.14" "ENSG00000033122.18"
#> [502] "ENSG00000033170.16" "ENSG00000033178.12" "ENSG00000033327.12"
#> [505] "ENSG00000033627.14" "ENSG00000033800.13" "ENSG00000033867.16"
#> [508] "ENSG00000034053.14" "ENSG00000034152.18" "ENSG00000034239.10"
#> [511] "ENSG00000034510.5" "ENSG00000034533.11" "ENSG00000034677.11"
#> [514] "ENSG00000034693.14" "ENSG00000034713.7" "ENSG00000034971.14"
#> [517] "ENSG00000035115.21" "ENSG00000035141.7" "ENSG00000035403.16"
#> [520] "ENSG00000035499.12" "ENSG00000035664.11" "ENSG00000035681.7"
#> [523] "ENSG00000035687.9" "ENSG00000035720.7" "ENSG00000035862.12"
#> [526] "ENSG00000035928.14" "ENSG00000036054.12" "ENSG00000036257.12"
#> [529] "ENSG00000036448.9" "ENSG00000036473.6" "ENSG00000036530.8"
#> [532] "ENSG00000036549.12" "ENSG00000036565.14" "ENSG00000036672.15"
#> [535] "ENSG00000036828.13" "ENSG00000037042.8" "ENSG00000037241.7"
#> [538] "ENSG00000037280.15" "ENSG00000037474.14" "ENSG00000037637.10"
#> [541] "ENSG00000037749.11" "ENSG00000037757.13" "ENSG00000037897.16"
#> [544] "ENSG00000037965.5" "ENSG00000038002.8" "ENSG00000038210.12"
#> [547] "ENSG00000038219.12" "ENSG00000038274.16" "ENSG00000038295.7"
#> [550] "ENSG00000038358.14" "ENSG00000038382.17" "ENSG00000038427.15"
#> [553] "ENSG00000038532.14" "ENSG00000038945.14" "ENSG00000039068.18"
#> [556] "ENSG00000039123.15" "ENSG00000039139.9" "ENSG00000039319.16"
#> [559] "ENSG00000039523.17" "ENSG00000039537.13" "ENSG00000039560.13"
#> [562] "ENSG00000039600.10" "ENSG00000039650.9" "ENSG00000039987.6"
#> [565] "ENSG00000040199.18" "ENSG00000040275.16" "ENSG00000040341.17"
#> [568] "ENSG00000040487.12" "ENSG00000040531.14" "ENSG00000040608.13"
#> [571] "ENSG00000040633.12" "ENSG00000040731.10" "ENSG00000040933.15"
#> [574] "ENSG00000041353.9" "ENSG00000041357.15" "ENSG00000041515.15"
#> [577] "ENSG00000041802.10" "ENSG00000041880.14" "ENSG00000041982.14"
#> [580] "ENSG00000041988.15" "ENSG00000042062.11" "ENSG00000042088.13"
#> [583] "ENSG00000042286.14" "ENSG00000042304.10" "ENSG00000042317.16"
#> [586] "ENSG00000042429.10" "ENSG00000042445.13" "ENSG00000042493.15"
#> [589] "ENSG00000042753.11" "ENSG00000042781.12" "ENSG00000042813.7"
#> [592] "ENSG00000042832.11" "ENSG00000042980.12" "ENSG00000043039.6"
#> [595] "ENSG00000043093.13" "ENSG00000043143.20" "ENSG00000043355.10"
#> [598] "ENSG00000043462.11" "ENSG00000043514.15" "ENSG00000043591.5"
#> [601] "ENSG00000044012.3" "ENSG00000044090.8" "ENSG00000044115.20"
#> [604] "ENSG00000044446.11" "ENSG00000044459.14" "ENSG00000044524.10"
#> [607] "ENSG00000044574.7" "ENSG00000046604.12" "ENSG00000046647.13"
#> [610] "ENSG00000046651.14" "ENSG00000046653.14" "ENSG00000046774.9"
#> [613] "ENSG00000046889.18" "ENSG00000047056.14" "ENSG00000047188.15"
#> [616] "ENSG00000047230.14" "ENSG00000047249.16" "ENSG00000047315.14"
#> [619] "ENSG00000047346.12" "ENSG00000047365.11" "ENSG00000047410.13"
#> [622] "ENSG00000047457.13" "ENSG00000047578.12" "ENSG00000047579.19"
#> [625] "ENSG00000047597.5" "ENSG00000047617.14" "ENSG00000047621.11"
#> [628] "ENSG00000047634.14" "ENSG00000047644.17" "ENSG00000047648.21"
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#> [19564] "ENSG00000202469.1" "ENSG00000202470.1" "ENSG00000202471.1"
#> [19567] "ENSG00000202472.1" "ENSG00000202473.1" "ENSG00000202474.1"
#> [19570] "ENSG00000202476.1" "ENSG00000202478.1" "ENSG00000202479.1"
#> [19573] "ENSG00000202485.1" "ENSG00000202490.1" "ENSG00000202491.1"
#> [19576] "ENSG00000202495.1" "ENSG00000202497.1" "ENSG00000202498.1"
#> [19579] "ENSG00000202499.1" "ENSG00000202502.1" "ENSG00000202503.1"
#> [19582] "ENSG00000202508.1" "ENSG00000202512.1" "ENSG00000202513.1"
#> [19585] "ENSG00000202514.1" "ENSG00000202515.1" "ENSG00000202517.1"
#> [19588] "ENSG00000202521.1" "ENSG00000202522.1" "ENSG00000202523.1"
#> [19591] "ENSG00000202526.1" "ENSG00000202528.1" "ENSG00000202529.1"
#> [19594] "ENSG00000202532.1" "ENSG00000202533.1" "ENSG00000202534.1"
#> [19597] "ENSG00000202536.2" "ENSG00000202537.1" "ENSG00000202538.1"
#> [19600] "ENSG00000202542.1" "ENSG00000202560.3" "ENSG00000202566.3"
#> [19603] "ENSG00000202569.3" "ENSG00000202601.3" "ENSG00000202609.3"
#> [19606] "ENSG00000203258.3" "ENSG00000203262.3" "ENSG00000203266.2"
#> [19609] "ENSG00000203279.3" "ENSG00000203280.4" "ENSG00000203286.5"
#> [19612] "ENSG00000203288.3" "ENSG00000203307.2" "ENSG00000203321.2"
#> [19615] "ENSG00000203325.3" "ENSG00000203326.9" "ENSG00000203327.2"
#> [19618] "ENSG00000203334.4" "ENSG00000203335.4" "ENSG00000203356.2"
#> [19621] "ENSG00000203362.2" "ENSG00000203363.2" "ENSG00000203364.2"
#> [19624] "ENSG00000203386.6" "ENSG00000203387.2" "ENSG00000203392.3"
#> [19627] "ENSG00000203395.2" "ENSG00000203396.3" "ENSG00000203397.2"
#> [19630] "ENSG00000203402.2" "ENSG00000203408.3" "ENSG00000203411.3"
#> [19633] "ENSG00000203413.3" "ENSG00000203414.2" "ENSG00000203416.3"
#> [19636] "ENSG00000203434.2" "ENSG00000203435.2" "ENSG00000203436.2"
#> [19639] "ENSG00000203437.3" "ENSG00000203441.2" "ENSG00000203446.2"
#> [19642] "ENSG00000203462.2" "ENSG00000203469.2" "ENSG00000203472.3"
#> [19645] "ENSG00000203485.12" "ENSG00000203489.3" "ENSG00000203492.3"
#> [19648] "ENSG00000203496.8" "ENSG00000203497.2" "ENSG00000203498.2"
#> [19651] "ENSG00000203499.10" "ENSG00000203506.5" "ENSG00000203520.3"
#> [19654] "ENSG00000203523.3" "ENSG00000203527.2" "ENSG00000203531.3"
#> [19657] "ENSG00000203546.7" "ENSG00000203560.3" "ENSG00000203565.2"
#> [19660] "ENSG00000203573.4" "ENSG00000203581.7" "ENSG00000203585.3"
#> [19663] "ENSG00000203588.3" "ENSG00000203593.3" "ENSG00000203601.3"
#> [19666] "ENSG00000203605.3" "ENSG00000203616.2" "ENSG00000203618.5"
#> [19669] "ENSG00000203620.2" "ENSG00000203635.2" "ENSG00000203643.3"
#> [19672] "ENSG00000203644.3" "ENSG00000203645.2" "ENSG00000203647.2"
#> [19675] "ENSG00000203648.3" "ENSG00000203650.7" "ENSG00000203661.3"
#> [19678] "ENSG00000203663.3" "ENSG00000203664.6" "ENSG00000203666.12"
#> [19681] "ENSG00000203667.9" "ENSG00000203668.1" "ENSG00000203684.5"
#> [19684] "ENSG00000203685.9" "ENSG00000203688.4" "ENSG00000203690.11"
#> [19687] "ENSG00000203697.11" "ENSG00000203705.10" "ENSG00000203706.8"
#> [19690] "ENSG00000203709.9" "ENSG00000203710.10" "ENSG00000203711.11"
#> [19693] "ENSG00000203721.5" "ENSG00000203722.7" "ENSG00000203724.10"
#> [19696] "ENSG00000203727.3" "ENSG00000203729.8" "ENSG00000203730.2"
#> [19699] "ENSG00000203733.5" "ENSG00000203734.11" "ENSG00000203737.3"
#> [19702] "ENSG00000203739.3" "ENSG00000203740.3" "ENSG00000203747.9"
#> [19705] "ENSG00000203756.7" "ENSG00000203757.1" "ENSG00000203758.4"
#> [19708] "ENSG00000203760.8" "ENSG00000203761.5" "ENSG00000203772.7"
#> [19711] "ENSG00000203778.7" "ENSG00000203780.10" "ENSG00000203781.4"
#> [19714] "ENSG00000203782.5" "ENSG00000203783.4" "ENSG00000203784.2"
#> [19717] "ENSG00000203785.8" "ENSG00000203786.6" "ENSG00000203791.13"
#> [19720] "ENSG00000203795.2" "ENSG00000203797.9" "ENSG00000203799.10"
#> [19723] "ENSG00000203801.8" "ENSG00000203804.4" "ENSG00000203805.10"
#> [19726] "ENSG00000203808.10" "ENSG00000203809.5" "ENSG00000203811.1"
#> [19729] "ENSG00000203812.2" "ENSG00000203814.6" "ENSG00000203818.7"
#> [19732] "ENSG00000203819.6" "ENSG00000203825.4" "ENSG00000203837.4"
#> [19735] "ENSG00000203852.3" "ENSG00000203855.7" "ENSG00000203857.9"
#> [19738] "ENSG00000203858.3" "ENSG00000203859.9" "ENSG00000203864.3"
#> [19741] "ENSG00000203865.9" "ENSG00000203867.7" "ENSG00000203870.5"
#> [19744] "ENSG00000203872.6" "ENSG00000203875.10" "ENSG00000203876.9"
#> [19747] "ENSG00000203877.7" "ENSG00000203878.11" "ENSG00000203879.11"
#> [19750] "ENSG00000203880.11" "ENSG00000203883.6" "ENSG00000203886.4"
#> [19753] "ENSG00000203896.9" "ENSG00000203897.3" "ENSG00000203900.2"
#> [19756] "ENSG00000203907.9" "ENSG00000203908.3" "ENSG00000203909.3"
#> [19759] "ENSG00000203910.8" "ENSG00000203914.4" "ENSG00000203923.4"
#> [19762] "ENSG00000203926.4" "ENSG00000203930.10" "ENSG00000203933.2"
#> [19765] "ENSG00000203942.4" "ENSG00000203943.8" "ENSG00000203950.6"
#> [19768] "ENSG00000203952.9" "ENSG00000203963.11" "ENSG00000203965.12"
#> [19771] "ENSG00000203970.3" "ENSG00000203971.1" "ENSG00000203972.9"
#> [19774] "ENSG00000203985.10" "ENSG00000203987.2" "ENSG00000203989.3"
#> [19777] "ENSG00000203993.4" "ENSG00000203995.9" "ENSG00000203999.8"
#> [19780] "ENSG00000204001.9" "ENSG00000204003.8" "ENSG00000204006.8"
#> [19783] "ENSG00000204007.6" "ENSG00000204010.3" "ENSG00000204011.4"
#> [19786] "ENSG00000204019.4" "ENSG00000204020.5" "ENSG00000204021.3"
#> [19789] "ENSG00000204022.9" "ENSG00000204025.6" "ENSG00000204031.3"
#> [19792] "ENSG00000204033.9" "ENSG00000204044.6" "ENSG00000204049.1"
#> [19795] "ENSG00000204052.4" "ENSG00000204053.6" "ENSG00000204054.11"
#> [19798] "ENSG00000204055.4" "ENSG00000204060.5" "ENSG00000204065.2"
#> [19801] "ENSG00000204070.9" "ENSG00000204071.9" "ENSG00000204072.3"
#> [19804] "ENSG00000204084.12" "ENSG00000204086.4" "ENSG00000204091.7"
#> [19807] "ENSG00000204092.2" "ENSG00000204099.11" "ENSG00000204103.3"
#> [19810] "ENSG00000204104.11" "ENSG00000204110.6" "ENSG00000204113.6"
#> [19813] "ENSG00000204116.11" "ENSG00000204117.1" "ENSG00000204118.1"
#> [19816] "ENSG00000204120.14" "ENSG00000204121.2" "ENSG00000204128.5"
#> [19819] "ENSG00000204130.12" "ENSG00000204131.8" "ENSG00000204136.10"
#> [19822] "ENSG00000204138.12" "ENSG00000204140.9" "ENSG00000204147.9"
#> [19825] "ENSG00000204148.3" "ENSG00000204149.9" "ENSG00000204152.10"
#> [19828] "ENSG00000204160.11" "ENSG00000204161.13" "ENSG00000204165.5"
#> [19831] "ENSG00000204172.11" "ENSG00000204173.10" "ENSG00000204174.6"
#> [19834] "ENSG00000204175.5" "ENSG00000204176.13" "ENSG00000204177.10"
#> [19837] "ENSG00000204178.9" "ENSG00000204179.10" "ENSG00000204183.1"
#> [19840] "ENSG00000204186.7" "ENSG00000204187.5" "ENSG00000204188.7"
#> [19843] "ENSG00000204193.10" "ENSG00000204194.1" "ENSG00000204195.3"
#> [19846] "ENSG00000204196.5" "ENSG00000204209.10" "ENSG00000204217.12"
#> [19849] "ENSG00000204219.9" "ENSG00000204220.9" "ENSG00000204227.4"
#> [19852] "ENSG00000204228.3" "ENSG00000204231.10" "ENSG00000204237.4"
#> [19855] "ENSG00000204241.7" "ENSG00000204246.2" "ENSG00000204248.10"
#> [19858] "ENSG00000204250.3" "ENSG00000204252.12" "ENSG00000204253.4"
#> [19861] "ENSG00000204256.12" "ENSG00000204257.14" "ENSG00000204261.8"
#> [19864] "ENSG00000204262.11" "ENSG00000204264.8" "ENSG00000204267.13"
#> [19867] "ENSG00000204271.10" "ENSG00000204272.10" "ENSG00000204277.1"
#> [19870] "ENSG00000204278.12" "ENSG00000204279.7" "ENSG00000204282.4"
#> [19873] "ENSG00000204283.3" "ENSG00000204287.13" "ENSG00000204290.10"
#> [19876] "ENSG00000204291.10" "ENSG00000204293.2" "ENSG00000204296.11"
#> [19879] "ENSG00000204300.6" "ENSG00000204301.6" "ENSG00000204304.11"
#> [19882] "ENSG00000204305.13" "ENSG00000204308.7" "ENSG00000204310.10"
#> [19885] "ENSG00000204311.11" "ENSG00000204314.10" "ENSG00000204315.3"
#> [19888] "ENSG00000204316.12" "ENSG00000204323.5" "ENSG00000204334.7"
#> [19891] "ENSG00000204335.3" "ENSG00000204338.8" "ENSG00000204344.14"
#> [19894] "ENSG00000204345.1" "ENSG00000204347.3" "ENSG00000204348.9"
#> [19897] "ENSG00000204351.11" "ENSG00000204352.2" "ENSG00000204356.11"
#> [19900] "ENSG00000204361.8" "ENSG00000204362.5" "ENSG00000204363.4"
#> [19903] "ENSG00000204365.5" "ENSG00000204366.3" "ENSG00000204368.6"
#> [19906] "ENSG00000204370.8" "ENSG00000204371.11" "ENSG00000204379.10"
#> [19909] "ENSG00000204380.4" "ENSG00000204381.11" "ENSG00000204382.11"
#> [19912] "ENSG00000204385.10" "ENSG00000204386.10" "ENSG00000204387.12"
#> [19915] "ENSG00000204388.6" "ENSG00000204389.9" "ENSG00000204390.9"
#> [19918] "ENSG00000204392.10" "ENSG00000204393.7" "ENSG00000204394.12"
#> [19921] "ENSG00000204396.10" "ENSG00000204397.7" "ENSG00000204398.5"
#> [19924] "ENSG00000204399.3" "ENSG00000204403.9" "ENSG00000204406.11"
#> [19927] "ENSG00000204410.14" "ENSG00000204414.11" "ENSG00000204420.8"
#> [19930] "ENSG00000204421.2" "ENSG00000204422.7" "ENSG00000204424.9"
#> [19933] "ENSG00000204427.11" "ENSG00000204428.12" "ENSG00000204429.4"
#> [19936] "ENSG00000204434.5" "ENSG00000204435.13" "ENSG00000204437.7"
#> [19939] "ENSG00000204438.10" "ENSG00000204439.3" "ENSG00000204442.3"
#> [19942] "ENSG00000204444.10" "ENSG00000204446.4" "ENSG00000204449.3"
#> [19945] "ENSG00000204450.7" "ENSG00000204455.7" "ENSG00000204456.4"
#> [19948] "ENSG00000204460.3" "ENSG00000204463.12" "ENSG00000204464.7"
#> [19951] "ENSG00000204469.12" "ENSG00000204471.3" "ENSG00000204472.12"
#> [19954] "ENSG00000204475.9" "ENSG00000204478.9" "ENSG00000204479.4"
#> [19957] "ENSG00000204480.7" "ENSG00000204481.7" "ENSG00000204482.10"
#> [19960] "ENSG00000204498.10" "ENSG00000204501.6" "ENSG00000204505.4"
#> [19963] "ENSG00000204510.5" "ENSG00000204511.2" "ENSG00000204514.9"
#> [19966] "ENSG00000204516.9" "ENSG00000204518.2" "ENSG00000204519.10"
#> [19969] "ENSG00000204520.12" "ENSG00000204524.6" "ENSG00000204525.14"
#> [19972] "ENSG00000204528.3" "ENSG00000204529.3" "ENSG00000204531.15"
#> [19975] "ENSG00000204532.6" "ENSG00000204536.13" "ENSG00000204538.3"
#> [19978] "ENSG00000204539.3" "ENSG00000204540.10" "ENSG00000204542.2"
#> [19981] "ENSG00000204544.5" "ENSG00000204547.7" "ENSG00000204548.3"
#> [19984] "ENSG00000204555.2" "ENSG00000204556.4" "ENSG00000204560.9"
#> [19987] "ENSG00000204564.11" "ENSG00000204566.6" "ENSG00000204568.11"
#> [19990] "ENSG00000204569.9" "ENSG00000204571.5" "ENSG00000204572.7"
#> [19993] "ENSG00000204574.12" "ENSG00000204576.11" "ENSG00000204577.11"
#> [19996] "ENSG00000204580.11" "ENSG00000204581.2" "ENSG00000204583.9"
#> [19999] "ENSG00000204584.1" "ENSG00000204588.5" "ENSG00000204590.12"
#> [20002] "ENSG00000204592.8" "ENSG00000204595.1" "ENSG00000204599.14"
#> [20005] "ENSG00000204603.6" "ENSG00000204604.9" "ENSG00000204610.12"
#> [20008] "ENSG00000204611.6" "ENSG00000204612.1" "ENSG00000204613.10"
#> [20011] "ENSG00000204614.8" "ENSG00000204616.10" "ENSG00000204618.8"
#> [20014] "ENSG00000204619.7" "ENSG00000204620.3" "ENSG00000204622.10"
#> [20017] "ENSG00000204623.8" "ENSG00000204624.7" "ENSG00000204625.10"
#> [20020] "ENSG00000204628.11" "ENSG00000204632.11" "ENSG00000204634.12"
#> [20023] "ENSG00000204637.4" "ENSG00000204640.1" "ENSG00000204642.13"
#> [20026] "ENSG00000204644.9" "ENSG00000204648.11" "ENSG00000204650.13"
#> [20029] "ENSG00000204652.6" "ENSG00000204653.9" "ENSG00000204655.11"
#> [20032] "ENSG00000204657.3" "ENSG00000204658.5" "ENSG00000204659.4"
#> [20035] "ENSG00000204661.9" "ENSG00000204662.2" "ENSG00000204663.9"
#> [20038] "ENSG00000204666.3" "ENSG00000204669.9" "ENSG00000204670.7"
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#> [20050] "ENSG00000204688.9" "ENSG00000204694.10" "ENSG00000204695.3"
#> [20053] "ENSG00000204697.3" "ENSG00000204699.4" "ENSG00000204700.4"
#> [20056] "ENSG00000204701.1" "ENSG00000204702.4" "ENSG00000204703.4"
#> [20059] "ENSG00000204704.2" "ENSG00000204705.3" "ENSG00000204706.14"
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#> [20065] "ENSG00000204713.10" "ENSG00000204717.4" "ENSG00000204718.3"
#> [20068] "ENSG00000204740.9" "ENSG00000204745.3" "ENSG00000204754.3"
#> [20071] "ENSG00000204758.7" "ENSG00000204764.12" "ENSG00000204767.3"
#> [20074] "ENSG00000204776.6" "ENSG00000204778.4" "ENSG00000204779.2"
#> [20077] "ENSG00000204780.5" "ENSG00000204787.8" "ENSG00000204789.4"
#> [20080] "ENSG00000204790.9" "ENSG00000204791.8" "ENSG00000204792.2"
#> [20083] "ENSG00000204801.7" "ENSG00000204802.3" "ENSG00000204805.8"
#> [20086] "ENSG00000204814.5" "ENSG00000204815.8" "ENSG00000204816.5"
#> [20089] "ENSG00000204818.4" "ENSG00000204822.6" "ENSG00000204832.9"
#> [20092] "ENSG00000204837.3" "ENSG00000204839.8" "ENSG00000204842.14"
#> [20095] "ENSG00000204843.12" "ENSG00000204849.7" "ENSG00000204850.4"
#> [20098] "ENSG00000204851.6" "ENSG00000204852.15" "ENSG00000204856.11"
#> [20101] "ENSG00000204859.11" "ENSG00000204860.4" "ENSG00000204866.8"
#> [20104] "ENSG00000204869.8" "ENSG00000204872.3" "ENSG00000204873.4"
#> [20107] "ENSG00000204876.4" "ENSG00000204880.7" "ENSG00000204882.3"
#> [20110] "ENSG00000204887.4" "ENSG00000204889.10" "ENSG00000204894.4"
#> [20113] "ENSG00000204897.6" "ENSG00000204899.5" "ENSG00000204904.7"
#> [20116] "ENSG00000204909.7" "ENSG00000204913.5" "ENSG00000204915.3"
#> [20119] "ENSG00000204918.3" "ENSG00000204919.1" "ENSG00000204920.10"
#> [20122] "ENSG00000204922.4" "ENSG00000204923.3" "ENSG00000204928.1"
#> [20125] "ENSG00000204929.11" "ENSG00000204930.9" "ENSG00000204933.3"
#> [20128] "ENSG00000204934.10" "ENSG00000204936.9" "ENSG00000204941.13"
#> [20131] "ENSG00000204946.9" "ENSG00000204947.8" "ENSG00000204949.8"
#> [20134] "ENSG00000204950.3" "ENSG00000204952.2" "ENSG00000204954.9"
#> [20137] "ENSG00000204956.5" "ENSG00000204959.4" "ENSG00000204960.6"
#> [20140] "ENSG00000204961.6" "ENSG00000204962.5" "ENSG00000204963.5"
#> [20143] "ENSG00000204965.8" "ENSG00000204967.10" "ENSG00000204969.6"
#> [20146] "ENSG00000204970.9" "ENSG00000204971.3" "ENSG00000204977.9"
#> [20149] "ENSG00000204978.2" "ENSG00000204979.7" "ENSG00000204982.3"
#> [20152] "ENSG00000204983.12" "ENSG00000204989.3" "ENSG00000204990.3"
#> [20155] "ENSG00000204991.10" "ENSG00000204993.3" "ENSG00000205002.3"
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#> [20164] "ENSG00000205035.8" "ENSG00000205037.2" "ENSG00000205038.11"
#> [20167] "ENSG00000205041.1" "ENSG00000205044.3" "ENSG00000205045.8"
#> [20170] "ENSG00000205054.6" "ENSG00000205056.8" "ENSG00000205057.4"
#> [20173] "ENSG00000205060.10" "ENSG00000205076.4" "ENSG00000205078.5"
#> [20176] "ENSG00000205084.10" "ENSG00000205085.8" "ENSG00000205086.6"
#> [20179] "ENSG00000205089.7" "ENSG00000205090.8" "ENSG00000205097.6"
#> [20182] "ENSG00000205100.2" "ENSG00000205105.6" "ENSG00000205106.4"
#> [20185] "ENSG00000205108.5" "ENSG00000205111.8" "ENSG00000205116.3"
#> [20188] "ENSG00000205126.2" "ENSG00000205129.8" "ENSG00000205133.11"
#> [20191] "ENSG00000205138.3" "ENSG00000205143.2" "ENSG00000205155.7"
#> [20194] "ENSG00000205174.4" "ENSG00000205176.3" "ENSG00000205177.6"
#> [20197] "ENSG00000205181.5" "ENSG00000205184.2" "ENSG00000205186.2"
#> [20200] "ENSG00000205189.11" "ENSG00000205208.4" "ENSG00000205209.7"
#> [20203] "ENSG00000205212.3" "ENSG00000205213.13" "ENSG00000205215.8"
#> [20206] "ENSG00000205220.11" "ENSG00000205221.12" "ENSG00000205231.1"
#> [20209] "ENSG00000205236.6" "ENSG00000205238.9" "ENSG00000205240.4"
#> [20212] "ENSG00000205250.8" "ENSG00000205266.9" "ENSG00000205267.5"
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#> [21109] "ENSG00000207380.1" "ENSG00000207381.1" "ENSG00000207382.1"
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#> [21124] "ENSG00000207399.1" "ENSG00000207401.1" "ENSG00000207402.1"
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#> [21184] "ENSG00000207480.1" "ENSG00000207481.1" "ENSG00000207483.1"
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#> [21190] "ENSG00000207490.1" "ENSG00000207491.1" "ENSG00000207492.1"
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#> [21196] "ENSG00000207496.1" "ENSG00000207497.1" "ENSG00000207499.1"
#> [21199] "ENSG00000207500.1" "ENSG00000207501.1" "ENSG00000207502.1"
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