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Internal function to create the XML of an MRCA prior, as used in the state section

Source: R/mrca_prior_to_xml_state.R
mrca_prior_to_xml_state.Rd

Internal function to create the XML of an MRCA prior, as used in the state section

Usage

mrca_prior_to_xml_state(inference_model)

Arguments

inference_model

a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model.

Value

the tree prior as XML text

Author

Richèl J.C. Bilderbeek

Examples

check_empty_beautier_folder()

mrca_prior_to_xml_state(
  inference_model = create_inference_model(
    mrca_prior = create_mrca_prior(
      alignment_id = "test_output_0",
      mrca_distr = create_normal_distr(id = 42)
    ),
    clock_model = create_strict_clock_model()
  )
)
#> [1] "<parameter id=\"clockRate.c:test_output_0\" name=\"stateNode\">1.0</parameter>"

check_empty_beautier_folder()