Fictional data for testing purposes from Biodiverse.
Format
A list with two elements:
- phy
Phylogeny with 31 tips
- comm
Community matrix with 127 sites and 31 species. Data are counts, i.e., the number of times a species was observed in a grid cell.
Details
Corresponds to the the community matrix ("groups" object) and phylogeny from the Biodiverse example_project.bps. # nolint
References
Laffan, S.W., Lubarsky, E. & Rosauer, D.F. (2010) Biodiverse, a tool for the spatial analysis of biological and related diversity. Ecography. Vol 33, 643-647 (Version 3.1). doi:10.1111/j.1600-0587.2010.06237.x
Examples
# Example phylogeny
biod_example$phy
#>
#> Phylogenetic tree with 31 tips and 30 internal nodes.
#>
#> Tip labels:
#> sp19, sp5, sp15, sp1, sp10, sp26, ...
#> Node labels:
#> 29___, 28___, 22___, 20___, 19___, 15___, ...
#>
#> Rooted; includes branch lengths.
# Example community
biod_example$comm[1:5, 1:5]
#> sp1 sp2 sp3 sp4 sp5
#> 1950000:1350000 0 0 0 0 0
#> 1950000:1450000 0 0 0 0 0
#> 2050000:1250000 0 0 0 0 0
#> 2050000:1350000 0 0 0 0 0
#> 2150000:1050000 0 0 0 0 0