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Changelog

Source: NEWS.md

eDNAjoint 0.3

CRAN release: 2025-01-17

User-facing changes

  • Changed function names to snakemake (i.e., jointModel() to joint_model())
  • Changed function arguments to snakemake (i.e., n.chain to n_chain)
  • Changed input data names to snakemake (i.e., qPCR.N to pcr_n)
  • Changed MCMC sampling arguments so the n_iter includes all MCMC iterations, including the number of warm-up iterations specified in n_warmup. Changed default values accordingly.

Non-user facing changes

  • Collapsed Stan files with more conditional statements to accommodate more model variations within one file
  • Added Stan helper functions
  • Moved joint_model and traditional_model helper functions to new files
  • Linted package to match default lintr style
  • Updated compilation flags to allow installation from source on Windows RStudio

eDNAjoint 0.2

CRAN release: 2024-10-08

  • Package source code now hosted at https://github.com/ropensci/eDNAjoint
  • Improved programming (i.e., reduced cyclomatic complexity, spacing, etc.)
  • Added functionality to accommodate semi-paired data (i.e., traditional samples not collected at all surveyed sites).
  • Improved integration of package print statements with user guide.
  • Updated default calculation of initial values for MCMC.

eDNAjoint 0.1

  • Initial version of the package on GitHub.