Get annotations by article — epmc_annotations_by_id • europepmc

Retrieve text-mined annotations contained in abstracts and open access full-text articles.

Usage

epmc_annotations_by_id(ids = NULL)

Arguments

ids,: character vector with publication identifiers following the structure "source:ext_id", e.g. `"MED:28585529"`

Value

returns text-mined annotations in a tidy format with the following variables

source: Publication data source
ext_id: Article Identifier
pmcid: PMCID that locates full-text in Pubmed Central
prefix: Text snipped found before the annotation
exact: Annotated entity
postfix: Text snipped found after the annotation
name: Targeted entity
uri: Uniform link dictionary entry for targeted entity
id: URL to full-text occurence of the annotation
type: Type of annotation like Chemicals
section: Article section mentioning the annotation like Methods
provider: Annotation data provider
subtype: Sub-data provider

Examples

if (FALSE) { # \dontrun{
  annotations_by_id("MED:28585529")
  # multiple ids
  annotations_by_id(c("MED:28585529", "PMC:PMC1664601"))
} # }