Get Single Nucleus Gex Summary — get_single_nucleus_gex_summary • gtexr

Retrieve Summarized Single Nucleus Gene Expression Data.

GTEx Portal API documentation

Usage

get_single_nucleus_gex_summary(
  datasetId = "gtex_snrnaseq_pilot",
  tissueSiteDetailIds = NULL,
  page = 0,
  itemsPerPage = 250
)

Arguments

datasetId: String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".
tissueSiteDetailIds: Character vector of IDs for tissues of interest. Can be GTEx specific IDs (e.g. "Whole_Blood"; use get_tissue_site_detail() to see valid values) or Ontology IDs.
page: Integer (default = 0).
itemsPerPage: Integer (default = 250).

Value

A tibble.

See also

Other Expression Data Endpoints: get_clustered_median_exon_expression(), get_clustered_median_gene_expression(), get_clustered_median_junction_expression(), get_clustered_median_transcript_expression(), get_expression_pca(), get_gene_expression(), get_median_exon_expression(), get_median_gene_expression(), get_median_junction_expression(), get_median_transcript_expression(), get_single_nucleus_gex(), get_top_expressed_genes()

Examples

if (FALSE) { # \dontrun{
# all tissues
get_single_nucleus_gex_summary()

# filter for specific tissue
get_single_nucleus_gex_summary(tissueSiteDetailIds = c("Breast_Mammary_Tissue",
                                                       "Skin_Sun_Exposed_Lower_leg"))
} # }