Package index

GTEx Portal API Info

Retrieve general service information about the GTEx API.

get_service_info(): Get Service Info

Admin Endpoints

Access maintenance messages and news updates from GTEx.

get_maintenance_message(): Get Maintenance Message

get_news_item(): Get News Item

Static Association Endpoints

Query precomputed eQTL and sQTL associations across tissues.

get_eqtl_genes(): Get Eqtl Genes

get_fine_mapping(): Get Fine Mapping

get_independent_eqtl(): Get Independent Eqtl

get_multi_tissue_eqtls(): Get Multi Tissue Eqtls

get_significant_single_tissue_eqtls(): Get Significant Single Tissue Eqtls

get_significant_single_tissue_eqtls_by_location(): Get Significant Single Tissue eQTLs By Location

get_significant_single_tissue_ieqtls(): Get Significant Single Tissue Ieqtls

get_significant_single_tissue_isqtls(): Get Significant Single Tissue Isqtls

get_significant_single_tissue_sqtls(): Get Significant Single Tissue Sqtls

get_sqtl_genes(): Get Sqtl Genes

Dynamic Association Endpoints

Perform on-the-fly eQTL and sQTL calculations.

calculate_expression_quantitative_trait_loci(): Calculate Expression Quantitative Trait Loci

calculate_ieqtls(): Calculate Ieqtls

calculate_isqtls(): Calculate Isqtls

calculate_splicing_quantitative_trait_loci(): Calculate Splicing Quantitative Trait Loci

Biobank Data Endpoints

Retrieve metadata on biobank samples.

download(): Download

get_sample_biobank_data(): Get Sample (Biobank Data)

Datasets Endpoints

Access various GTEx dataset information, as well as variant annotation and linkage disequilibrium data.

get_annotation(): Get Annotation

get_collapsed_gene_model_exon(): Get Collapsed Gene Model Exon

get_downloads_page_data(): Get Downloads Page Data

get_file_list(): Get File List

get_full_get_collapsed_gene_model_exon(): Get Full Get Collapsed Gene Model Exon

get_functional_annotation(): Get Functional Annotation

get_linkage_disequilibrium_by_variant_data(): Get Linkage Disequilibrium By Variant Data

get_linkage_disequilibrium_data(): Get Linkage Disequilibrium Data

get_sample_datasets(): Get Sample (Datasets)

get_subject(): Get Subject

get_tissue_site_detail(): Get Tissue Site Detail

get_variant(): Get Variant

get_variant_by_location(): Get Variant By Location

Expression Data Endpoints

Obtain expression levels across tissues, including gene, exon, junction, and transcript-level data.

get_clustered_median_exon_expression(): Get Clustered Median Exon Expression

get_clustered_median_gene_expression(): Get Clustered Median Gene Expression

get_clustered_median_junction_expression(): Get Clustered Median Junction Expression

get_clustered_median_transcript_expression(): Get Clustered Median Transcript Expression

get_expression_pca(): Get Expression Pca

get_gene_expression(): Get Gene Expression

get_median_exon_expression(): Get Median Exon Expression

get_median_gene_expression(): Get Median Gene Expression

get_median_junction_expression(): Get Median Junction Expression

get_median_transcript_expression(): Get Median Transcript Expression

get_single_nucleus_gex(): Get Single Nucleus Gex

get_single_nucleus_gex_summary(): Get Single Nucleus Gex Summary

get_top_expressed_genes(): Get Top Expressed Genes

Histology Endpoints

Retrieve tissue histology image data.

get_image(): Get Image

Metadata Endpoints

Get dataset metadata (currently not active).

get_dataset_info(): Get Dataset Info

Reference Genome Endpoints

Query reference genome features, including genetic coordinates for genes, transcripts and exons, as well as reported phenotype associations for a region.

get_exons(): Get Exons

get_gene_search(): Get Gene Search

get_genes(): Get Genes

get_genomic_features(): Get Genomic Features

get_gwas_catalog_by_location(): Get Gwas Catalog By Location

get_neighbor_gene(): Get Neighbor Gene

get_transcripts(): Get Transcripts