Changelog

gtexr (development version)

Breaking changes:
- get_sample_datasets() has been fixed to return a tibble with one row per data item.

CRAN release: 2025-04-23

All functions now include a .return_raw argument, enabling the user to retrieve the raw JSON from API calls.
Functions that return a paginated response now include a .verbose argument, which can be set to FALSE to suppress pagination messages. The itemsPerPage argument for these functions can also be set globally by adjusting option “gtexr.itemsPerPage”.
get_dataset_info() has now been fixed (previously returned an empty tibble).
Breaking changes:
- get_sample_datasets_endpoints() has been renamed to get_sample_datasets(). This is to match the naming convention used for get_sample_biobank_data(), whereby ‘get_sample’ is appended with their respective category titles ‘datasets’ and ‘biobank_data’.
- get_multi_tissue_eqtls() has been fixed to return a tibble with one row per data item. Argument gencodeIds has also been renamed to gencodeId to match the GTEx API.

Various function arguments have been updated to match the GTEx API:
- get_sqtl_genes() argument tissueSiteDetailId has been pluralised to tissueSiteDetailIds.
- get_eqtl_genes(), get_sqtl_genes(), get_exons(), get_neighbor_gene(), get_subject(), get_tissue_site_detail(), get_significant_single_tissue_sqtls(), download() and get_sample_datasets() (formerly called get_sample_datasets_endpoints()) default argument values now match API.

CRAN release: 2024-09-19