A class for managing metadata associated with occCite queries and data manipulation.
Slots
userQueryType
A vector of type character specifying whether the user made their original taxonomic query based on a vector of taxon names or a phylogeny.
userSpecTaxonomy
A vector of type character that presents a list of taxonomic sources for cleaning taxonomy of queries. This can be user-specified or default.
cleanedTaxonomy
A data frame with containing input taxon names, the closest match according to
gnr_resolve
, and a list of taxonomic data sources that contain the matching name, generated bystudyTaxonList
.occSources
A vector of class "character" containing a list of occurrence data sources, generated when passing a
occCiteData
object throughoccQuery
.occCiteSearchDate
The date on which the occurrence search query was conducted via occCite.
occResults
The results of an
occQuery
search, stored as a named list, each of the items named after a searched taxon and containing a data frame with occurrence information.