Multiple cluster records.
Usage
# S4 method for class 'ClstrArc'
as.character(x)
# S4 method for class 'ClstrArc'
show(object)
# S4 method for class 'ClstrArc'
print(x)
# S4 method for class 'ClstrArc'
str(object, max.level = 2L, ...)
# S4 method for class 'ClstrArc'
summary(object)
# S4 method for class 'ClstrArc,character'
x[[i]]
# S4 method for class 'ClstrArc,character,missing,missing'
x[i, j, ..., drop = TRUE]See also
Other run-public:
ClstrRec-class,
Phylota-class,
SeqArc-class,
SeqRec-class,
TaxDict-class,
TaxRec-class,
clusters2_run(),
clusters_run(),
parameters_reset(),
reset(),
restart(),
run(),
setup(),
taxise_run()
Examples
data('aotus')
clstrarc <- aotus@clstrs
# this is a ClstrArc object
# it contains cluster records
show(clstrarc)
#> Archive of cluster record(s)
#> - [184] clusters
# you can access its different data slots with @
clstrarc@ids # unique cluster ID
#> [1] "0" "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11"
#> [13] "12" "13" "14" "15" "16" "17" "18" "19" "20" "21" "22" "23"
#> [25] "24" "25" "26" "27" "28" "29" "30" "31" "32" "33" "34" "35"
#> [37] "36" "37" "38" "39" "40" "41" "42" "43" "44" "45" "46" "47"
#> [49] "48" "49" "50" "51" "52" "53" "54" "55" "56" "57" "58" "59"
#> [61] "60" "61" "62" "63" "64" "65" "66" "67" "68" "69" "70" "71"
#> [73] "72" "73" "74" "75" "76" "77" "78" "79" "80" "81" "82" "83"
#> [85] "84" "85" "86" "87" "88" "89" "90" "91" "92" "93" "94" "95"
#> [97] "96" "97" "98" "99" "100" "101" "102" "103" "104" "105" "106" "107"
#> [109] "108" "109" "110" "111" "112" "113" "114" "115" "116" "117" "118" "119"
#> [121] "120" "121" "122" "123" "124" "125" "126" "127" "128" "129" "130" "131"
#> [133] "132" "133" "134" "135" "136" "137" "138" "139" "140" "141" "142" "143"
#> [145] "144" "145" "146" "147" "148" "149" "150" "151" "152" "153" "154" "155"
#> [157] "156" "157" "158" "159" "160" "161" "162" "163" "164" "165" "166" "167"
#> [169] "168" "169" "170" "171" "172" "173" "174" "175" "176" "177" "178" "179"
#> [181] "180" "181" "182" "183"
clstrarc@clstrs # list of cluster records
#> $`0`
#> Cluster Record [id 0]
#> - [subtree] type
#> - [AF129795.1] seed sequence
#> - [173] sequences
#> - [5] taxa
#>
#> $`1`
#> Cluster Record [id 1]
#> - [subtree] type
#> - [DQ098863.1] seed sequence
#> - [66] sequences
#> - [10] taxa
#>
#> $`2`
#> Cluster Record [id 2]
#> - [subtree] type
#> - [AY659849.1] seed sequence
#> - [55] sequences
#> - [5] taxa
#>
#> $`3`
#> Cluster Record [id 3]
#> - [subtree] type
#> - [DI178118.1] seed sequence
#> - [52] sequences
#> - [2] taxa
#>
#> $`4`
#> Cluster Record [id 4]
#> - [subtree] type
#> - [LC075891.1] seed sequence
#> - [50] sequences
#> - [2] taxa
#>
#> $`5`
#> Cluster Record [id 5]
#> - [subtree] type
#> - [HM761925.1] seed sequence
#> - [49] sequences
#> - [9] taxa
#>
#> $`6`
#> Cluster Record [id 6]
#> - [subtree] type
#> - [HM763429.1] seed sequence
#> - [49] sequences
#> - [9] taxa
#>
#> $`7`
#> Cluster Record [id 7]
#> - [subtree] type
#> - [JQ933053.1] seed sequence
#> - [48] sequences
#> - [9] taxa
#>
#> $`8`
#> Cluster Record [id 8]
#> - [subtree] type
#> - [HM759641.1] seed sequence
#> - [48] sequences
#> - [9] taxa
#>
#> $`9`
#> Cluster Record [id 9]
#> - [subtree] type
#> - [KC761951.1] seed sequence
#> - [47] sequences
#> - [9] taxa
#>
#> $`10`
#> Cluster Record [id 10]
#> - [subtree] type
#> - [MT489103.1] seed sequence
#> - [45] sequences
#> - [8] taxa
#>
#> $`11`
#> Cluster Record [id 11]
#> - [subtree] type
#> - [KC762127.1] seed sequence
#> - [45] sequences
#> - [9] taxa
#>
#> $`12`
#> Cluster Record [id 12]
#> - [subtree] type
#> - [KC761371.1] seed sequence
#> - [45] sequences
#> - [9] taxa
#>
#> $`13`
#> Cluster Record [id 13]
#> - [subtree] type
#> - [KC760228.1] seed sequence
#> - [43] sequences
#> - [9] taxa
#>
#> $`14`
#> Cluster Record [id 14]
#> - [subtree] type
#> - [JQ932794.1] seed sequence
#> - [43] sequences
#> - [4] taxa
#>
#> $`15`
#> Cluster Record [id 15]
#> - [direct] type
#> - [LC075891.1] seed sequence
#> - [43] sequences
#> - [1] taxa
#>
#> $`16`
#> Cluster Record [id 16]
#> - [subtree] type
#> - [EF658652.1] seed sequence
#> - [41] sequences
#> - [9] taxa
#>
#> $`17`
#> Cluster Record [id 17]
#> - [subtree] type
#> - [HM760775.1] seed sequence
#> - [41] sequences
#> - [8] taxa
#>
#> $`18`
#> Cluster Record [id 18]
#> - [subtree] type
#> - [MT488555.1] seed sequence
#> - [41] sequences
#> - [8] taxa
#>
#> $`19`
#> Cluster Record [id 19]
#> - [subtree] type
#> - [U38998.1] seed sequence
#> - [40] sequences
#> - [8] taxa
#>
#> $`20`
#> Cluster Record [id 20]
#> - [subtree] type
#> - [DQ321662.1] seed sequence
#> - [35] sequences
#> - [8] taxa
#>
#> $`21`
#> Cluster Record [id 21]
#> - [subtree] type
#> - [JQ932751.1] seed sequence
#> - [35] sequences
#> - [2] taxa
#>
#> $`22`
#> Cluster Record [id 22]
#> - [subtree] type
#> - [JN161069.1] seed sequence
#> - [30] sequences
#> - [1] taxa
#>
#> $`23`
#> Cluster Record [id 23]
#> - [direct] type
#> - [LC456000.1] seed sequence
#> - [30] sequences
#> - [1] taxa
#>
#> $`24`
#> Cluster Record [id 24]
#> - [subtree] type
#> - [JN161069.1] seed sequence
#> - [30] sequences
#> - [1] taxa
#>
#> $`25`
#> Cluster Record [id 25]
#> - [subtree] type
#> - [AF333711.1] seed sequence
#> - [28] sequences
#> - [1] taxa
#>
#> $`26`
#> Cluster Record [id 26]
#> - [subtree] type
#> - [JQ932884.1] seed sequence
#> - [24] sequences
#> - [4] taxa
#>
#> $`27`
#> Cluster Record [id 27]
#> - [subtree] type
#> - [LC075890.1] seed sequence
#> - [24] sequences
#> - [2] taxa
#>
#> $`28`
#> Cluster Record [id 28]
#> - [subtree] type
#> - [DQ098867.1] seed sequence
#> - [24] sequences
#> - [2] taxa
#>
#> $`29`
#> Cluster Record [id 29]
#> - [subtree] type
#> - [AY900534.1] seed sequence
#> - [21] sequences
#> - [1] taxa
#>
#> $`30`
#> Cluster Record [id 30]
#> - [subtree] type
#> - [AF378747.1] seed sequence
#> - [20] sequences
#> - [1] taxa
#>
#> $`31`
#> Cluster Record [id 31]
#> - [subtree] type
#> - [AY227055.1] seed sequence
#> - [20] sequences
#> - [1] taxa
#>
#> $`32`
#> Cluster Record [id 32]
#> - [subtree] type
#> - [HM763430.1] seed sequence
#> - [20] sequences
#> - [2] taxa
#>
#> $`33`
#> Cluster Record [id 33]
#> - [subtree] type
#> - [HM759643.1] seed sequence
#> - [20] sequences
#> - [2] taxa
#>
#> $`34`
#> Cluster Record [id 34]
#> - [subtree] type
#> - [HM761926.1] seed sequence
#> - [20] sequences
#> - [2] taxa
#>
#> $`35`
#> Cluster Record [id 35]
#> - [subtree] type
#> - [JQ932877.1] seed sequence
#> - [19] sequences
#> - [4] taxa
#>
#> $`36`
#> Cluster Record [id 36]
#> - [subtree] type
#> - [JQ933028.1] seed sequence
#> - [19] sequences
#> - [2] taxa
#>
#> $`37`
#> Cluster Record [id 37]
#> - [subtree] type
#> - [JQ932999.1] seed sequence
#> - [18] sequences
#> - [1] taxa
#>
#> $`38`
#> Cluster Record [id 38]
#> - [subtree] type
#> - [AF027542.1] seed sequence
#> - [18] sequences
#> - [1] taxa
#>
#> $`39`
#> Cluster Record [id 39]
#> - [subtree] type
#> - [AF333712.1] seed sequence
#> - [18] sequences
#> - [1] taxa
#>
#> $`40`
#> Cluster Record [id 40]
#> - [direct] type
#> - [LC075890.1] seed sequence
#> - [18] sequences
#> - [1] taxa
#>
#> $`41`
#> Cluster Record [id 41]
#> - [subtree] type
#> - [MT483703.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`42`
#> Cluster Record [id 42]
#> - [subtree] type
#> - [MT488555.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`43`
#> Cluster Record [id 43]
#> - [subtree] type
#> - [MT492158.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`44`
#> Cluster Record [id 44]
#> - [subtree] type
#> - [MT483753.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`45`
#> Cluster Record [id 45]
#> - [subtree] type
#> - [MT488933.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`46`
#> Cluster Record [id 46]
#> - [subtree] type
#> - [MT488817.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`47`
#> Cluster Record [id 47]
#> - [subtree] type
#> - [MT489103.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`48`
#> Cluster Record [id 48]
#> - [subtree] type
#> - [MT489061.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`49`
#> Cluster Record [id 49]
#> - [subtree] type
#> - [MT489018.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`50`
#> Cluster Record [id 50]
#> - [subtree] type
#> - [MT488976.1] seed sequence
#> - [18] sequences
#> - [2] taxa
#>
#> $`51`
#> Cluster Record [id 51]
#> - [subtree] type
#> - [JQ932845.1] seed sequence
#> - [16] sequences
#> - [3] taxa
#>
#> $`52`
#> Cluster Record [id 52]
#> - [subtree] type
#> - [MT488890.1] seed sequence
#> - [16] sequences
#> - [2] taxa
#>
#> $`53`
#> Cluster Record [id 53]
#> - [subtree] type
#> - [MF615377.1] seed sequence
#> - [14] sequences
#> - [3] taxa
#>
#> $`54`
#> Cluster Record [id 54]
#> - [direct] type
#> - [LC456005.1] seed sequence
#> - [14] sequences
#> - [1] taxa
#>
#> $`55`
#> Cluster Record [id 55]
#> - [subtree] type
#> - [DQ321662.1] seed sequence
#> - [13] sequences
#> - [2] taxa
#>
#> $`56`
#> Cluster Record [id 56]
#> - [subtree] type
#> - [AF161946.1] seed sequence
#> - [12] sequences
#> - [4] taxa
#>
#> $`57`
#> Cluster Record [id 57]
#> - [subtree] type
#> - [JQ932800.1] seed sequence
#> - [12] sequences
#> - [3] taxa
#>
#> $`58`
#> Cluster Record [id 58]
#> - [subtree] type
#> - [JQ932874.1] seed sequence
#> - [12] sequences
#> - [1] taxa
#>
#> $`59`
#> Cluster Record [id 59]
#> - [subtree] type
#> - [KY508404.1] seed sequence
#> - [12] sequences
#> - [1] taxa
#>
#> $`60`
#> Cluster Record [id 60]
#> - [subtree] type
#> - [JQ932840.1] seed sequence
#> - [11] sequences
#> - [1] taxa
#>
#> $`61`
#> Cluster Record [id 61]
#> - [subtree] type
#> - [AF107750.1] seed sequence
#> - [11] sequences
#> - [1] taxa
#>
#> $`62`
#> Cluster Record [id 62]
#> - [subtree] type
#> - [AY900546.1] seed sequence
#> - [11] sequences
#> - [1] taxa
#>
#> $`63`
#> Cluster Record [id 63]
#> - [subtree] type
#> - [AY646200.1] seed sequence
#> - [10] sequences
#> - [4] taxa
#>
#> $`64`
#> Cluster Record [id 64]
#> - [subtree] type
#> - [JQ932868.1] seed sequence
#> - [10] sequences
#> - [2] taxa
#>
#> $`65`
#> Cluster Record [id 65]
#> - [subtree] type
#> - [AY894647.1] seed sequence
#> - [10] sequences
#> - [1] taxa
#>
#> $`66`
#> Cluster Record [id 66]
#> - [subtree] type
#> - [JQ932807.1] seed sequence
#> - [9] sequences
#> - [1] taxa
#>
#> $`67`
#> Cluster Record [id 67]
#> - [subtree] type
#> - [AF338375.1] seed sequence
#> - [8] sequences
#> - [6] taxa
#>
#> $`68`
#> Cluster Record [id 68]
#> - [subtree] type
#> - [JQ932913.1] seed sequence
#> - [7] sequences
#> - [2] taxa
#>
#> $`69`
#> Cluster Record [id 69]
#> - [subtree] type
#> - [HM758650.1] seed sequence
#> - [7] sequences
#> - [5] taxa
#>
#> $`70`
#> Cluster Record [id 70]
#> - [subtree] type
#> - [AY900559.1] seed sequence
#> - [7] sequences
#> - [1] taxa
#>
#> $`71`
#> Cluster Record [id 71]
#> - [direct] type
#> - [EF658652.1] seed sequence
#> - [7] sequences
#> - [1] taxa
#>
#> $`72`
#> Cluster Record [id 72]
#> - [subtree] type
#> - [JQ933020.1] seed sequence
#> - [6] sequences
#> - [4] taxa
#>
#> $`73`
#> Cluster Record [id 73]
#> - [subtree] type
#> - [KC761051.1] seed sequence
#> - [6] sequences
#> - [4] taxa
#>
#> $`74`
#> Cluster Record [id 74]
#> - [subtree] type
#> - [HM759273.1] seed sequence
#> - [6] sequences
#> - [5] taxa
#>
#> $`75`
#> Cluster Record [id 75]
#> - [subtree] type
#> - [AY449069.1] seed sequence
#> - [6] sequences
#> - [1] taxa
#>
#> $`76`
#> Cluster Record [id 76]
#> - [subtree] type
#> - [AY684991.1] seed sequence
#> - [6] sequences
#> - [1] taxa
#>
#> $`77`
#> Cluster Record [id 77]
#> - [direct] type
#> - [AY449069.1] seed sequence
#> - [6] sequences
#> - [1] taxa
#>
#> $`78`
#> Cluster Record [id 78]
#> - [subtree] type
#> - [DQ989366.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`79`
#> Cluster Record [id 79]
#> - [subtree] type
#> - [JQ933005.1] seed sequence
#> - [5] sequences
#> - [1] taxa
#>
#> $`80`
#> Cluster Record [id 80]
#> - [subtree] type
#> - [JQ932259.1] seed sequence
#> - [5] sequences
#> - [1] taxa
#>
#> $`81`
#> Cluster Record [id 81]
#> - [subtree] type
#> - [JQ932880.1] seed sequence
#> - [5] sequences
#> - [1] taxa
#>
#> $`82`
#> Cluster Record [id 82]
#> - [subtree] type
#> - [JQ932869.1] seed sequence
#> - [5] sequences
#> - [3] taxa
#>
#> $`83`
#> Cluster Record [id 83]
#> - [subtree] type
#> - [HM756838.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`84`
#> Cluster Record [id 84]
#> - [subtree] type
#> - [HM757379.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`85`
#> Cluster Record [id 85]
#> - [subtree] type
#> - [HM757554.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`86`
#> Cluster Record [id 86]
#> - [subtree] type
#> - [HM757720.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`87`
#> Cluster Record [id 87]
#> - [subtree] type
#> - [HM758212.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`88`
#> Cluster Record [id 88]
#> - [subtree] type
#> - [HM758297.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`89`
#> Cluster Record [id 89]
#> - [subtree] type
#> - [HM758463.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`90`
#> Cluster Record [id 90]
#> - [subtree] type
#> - [HM758930.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`91`
#> Cluster Record [id 91]
#> - [subtree] type
#> - [HM759101.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`92`
#> Cluster Record [id 92]
#> - [subtree] type
#> - [HM759372.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`93`
#> Cluster Record [id 93]
#> - [subtree] type
#> - [HM759729.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`94`
#> Cluster Record [id 94]
#> - [subtree] type
#> - [HM759896.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`95`
#> Cluster Record [id 95]
#> - [subtree] type
#> - [HM760080.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`96`
#> Cluster Record [id 96]
#> - [subtree] type
#> - [HM760256.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`97`
#> Cluster Record [id 97]
#> - [subtree] type
#> - [HM760525.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`98`
#> Cluster Record [id 98]
#> - [subtree] type
#> - [HM760608.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`99`
#> Cluster Record [id 99]
#> - [subtree] type
#> - [HM761193.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`100`
#> Cluster Record [id 100]
#> - [subtree] type
#> - [HM761507.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`101`
#> Cluster Record [id 101]
#> - [subtree] type
#> - [HM761768.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`102`
#> Cluster Record [id 102]
#> - [subtree] type
#> - [HM762092.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`103`
#> Cluster Record [id 103]
#> - [subtree] type
#> - [HM762180.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`104`
#> Cluster Record [id 104]
#> - [subtree] type
#> - [HM762427.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`105`
#> Cluster Record [id 105]
#> - [subtree] type
#> - [HM762765.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`106`
#> Cluster Record [id 106]
#> - [subtree] type
#> - [HM763261.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`107`
#> Cluster Record [id 107]
#> - [subtree] type
#> - [HM763727.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`108`
#> Cluster Record [id 108]
#> - [subtree] type
#> - [HM764102.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`109`
#> Cluster Record [id 109]
#> - [subtree] type
#> - [HM764317.1] seed sequence
#> - [5] sequences
#> - [5] taxa
#>
#> $`110`
#> Cluster Record [id 110]
#> - [subtree] type
#> - [KR902342.1] seed sequence
#> - [4] sequences
#> - [3] taxa
#>
#> $`111`
#> Cluster Record [id 111]
#> - [subtree] type
#> - [AF014508.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`112`
#> Cluster Record [id 112]
#> - [subtree] type
#> - [AF014506.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`113`
#> Cluster Record [id 113]
#> - [subtree] type
#> - [KC762160.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`114`
#> Cluster Record [id 114]
#> - [subtree] type
#> - [KC762072.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`115`
#> Cluster Record [id 115]
#> - [subtree] type
#> - [KC762014.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`116`
#> Cluster Record [id 116]
#> - [subtree] type
#> - [KC761980.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`117`
#> Cluster Record [id 117]
#> - [subtree] type
#> - [KC761918.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`118`
#> Cluster Record [id 118]
#> - [subtree] type
#> - [KC761889.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`119`
#> Cluster Record [id 119]
#> - [subtree] type
#> - [KC761833.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`120`
#> Cluster Record [id 120]
#> - [subtree] type
#> - [KC761782.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`121`
#> Cluster Record [id 121]
#> - [subtree] type
#> - [KC761695.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`122`
#> Cluster Record [id 122]
#> - [subtree] type
#> - [KC761632.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`123`
#> Cluster Record [id 123]
#> - [subtree] type
#> - [KC761601.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`124`
#> Cluster Record [id 124]
#> - [subtree] type
#> - [KC761569.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`125`
#> Cluster Record [id 125]
#> - [subtree] type
#> - [KC761504.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`126`
#> Cluster Record [id 126]
#> - [subtree] type
#> - [KC761470.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`127`
#> Cluster Record [id 127]
#> - [subtree] type
#> - [KC761405.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`128`
#> Cluster Record [id 128]
#> - [subtree] type
#> - [KC761242.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`129`
#> Cluster Record [id 129]
#> - [subtree] type
#> - [KC761177.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`130`
#> Cluster Record [id 130]
#> - [subtree] type
#> - [KC761016.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`131`
#> Cluster Record [id 131]
#> - [subtree] type
#> - [KC760988.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`132`
#> Cluster Record [id 132]
#> - [subtree] type
#> - [JQ932280.1] seed sequence
#> - [4] sequences
#> - [3] taxa
#>
#> $`133`
#> Cluster Record [id 133]
#> - [subtree] type
#> - [JQ932662.1] seed sequence
#> - [4] sequences
#> - [3] taxa
#>
#> $`134`
#> Cluster Record [id 134]
#> - [subtree] type
#> - [HM762511.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`135`
#> Cluster Record [id 135]
#> - [subtree] type
#> - [HM764645.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`136`
#> Cluster Record [id 136]
#> - [subtree] type
#> - [AF027546.1] seed sequence
#> - [4] sequences
#> - [1] taxa
#>
#> $`137`
#> Cluster Record [id 137]
#> - [subtree] type
#> - [HM764908.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`138`
#> Cluster Record [id 138]
#> - [subtree] type
#> - [HM765175.1] seed sequence
#> - [4] sequences
#> - [4] taxa
#>
#> $`139`
#> Cluster Record [id 139]
#> - [subtree] type
#> - [AB239200.1] seed sequence
#> - [4] sequences
#> - [1] taxa
#>
#> $`140`
#> Cluster Record [id 140]
#> - [direct] type
#> - [DQ098863.1] seed sequence
#> - [4] sequences
#> - [1] taxa
#>
#> $`141`
#> Cluster Record [id 141]
#> - [direct] type
#> - [DQ098851.1] seed sequence
#> - [4] sequences
#> - [1] taxa
#>
#> $`142`
#> Cluster Record [id 142]
#> - [subtree] type
#> - [HM758657.1] seed sequence
#> - [4] sequences
#> - [2] taxa
#>
#> $`143`
#> Cluster Record [id 143]
#> - [subtree] type
#> - [MW321653.1] seed sequence
#> - [3] sequences
#> - [2] taxa
#>
#> $`144`
#> Cluster Record [id 144]
#> - [subtree] type
#> - [AF014509.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`145`
#> Cluster Record [id 145]
#> - [subtree] type
#> - [KC762104.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`146`
#> Cluster Record [id 146]
#> - [subtree] type
#> - [KC761277.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`147`
#> Cluster Record [id 147]
#> - [subtree] type
#> - [KC761210.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`148`
#> Cluster Record [id 148]
#> - [subtree] type
#> - [KC761755.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`149`
#> Cluster Record [id 149]
#> - [subtree] type
#> - [KC761438.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`150`
#> Cluster Record [id 150]
#> - [subtree] type
#> - [KC761338.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`151`
#> Cluster Record [id 151]
#> - [subtree] type
#> - [KC760954.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`152`
#> Cluster Record [id 152]
#> - [subtree] type
#> - [KC760866.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`153`
#> Cluster Record [id 153]
#> - [subtree] type
#> - [KC760833.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`154`
#> Cluster Record [id 154]
#> - [subtree] type
#> - [KC760802.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`155`
#> Cluster Record [id 155]
#> - [subtree] type
#> - [KC760770.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`156`
#> Cluster Record [id 156]
#> - [subtree] type
#> - [KC760738.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`157`
#> Cluster Record [id 157]
#> - [subtree] type
#> - [KC760712.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`158`
#> Cluster Record [id 158]
#> - [subtree] type
#> - [KC760681.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`159`
#> Cluster Record [id 159]
#> - [subtree] type
#> - [KC760611.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`160`
#> Cluster Record [id 160]
#> - [subtree] type
#> - [KC760514.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`161`
#> Cluster Record [id 161]
#> - [subtree] type
#> - [KC760417.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`162`
#> Cluster Record [id 162]
#> - [subtree] type
#> - [KC760385.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`163`
#> Cluster Record [id 163]
#> - [subtree] type
#> - [KC760326.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`164`
#> Cluster Record [id 164]
#> - [subtree] type
#> - [KC760263.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`165`
#> Cluster Record [id 165]
#> - [subtree] type
#> - [HM761011.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`166`
#> Cluster Record [id 166]
#> - [subtree] type
#> - [HM761143.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`167`
#> Cluster Record [id 167]
#> - [subtree] type
#> - [HM762858.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`168`
#> Cluster Record [id 168]
#> - [subtree] type
#> - [HM763019.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`169`
#> Cluster Record [id 169]
#> - [subtree] type
#> - [HM763994.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`170`
#> Cluster Record [id 170]
#> - [subtree] type
#> - [HM764396.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`171`
#> Cluster Record [id 171]
#> - [subtree] type
#> - [AY900524.1] seed sequence
#> - [3] sequences
#> - [1] taxa
#>
#> $`172`
#> Cluster Record [id 172]
#> - [subtree] type
#> - [HM764813.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`173`
#> Cluster Record [id 173]
#> - [subtree] type
#> - [AY449065.1] seed sequence
#> - [3] sequences
#> - [1] taxa
#>
#> $`174`
#> Cluster Record [id 174]
#> - [subtree] type
#> - [AY449057.1] seed sequence
#> - [3] sequences
#> - [1] taxa
#>
#> $`175`
#> Cluster Record [id 175]
#> - [subtree] type
#> - [HM756999.1] seed sequence
#> - [3] sequences
#> - [3] taxa
#>
#> $`176`
#> Cluster Record [id 176]
#> - [subtree] type
#> - [AB239246.1] seed sequence
#> - [3] sequences
#> - [1] taxa
#>
#> $`177`
#> Cluster Record [id 177]
#> - [subtree] type
#> - [AB239226.1] seed sequence
#> - [3] sequences
#> - [1] taxa
#>
#> $`178`
#> Cluster Record [id 178]
#> - [subtree] type
#> - [FJ154793.1] seed sequence
#> - [3] sequences
#> - [1] taxa
#>
#> $`179`
#> Cluster Record [id 179]
#> - [direct] type
#> - [AY449065.1] seed sequence
#> - [3] sequences
#> - [1] taxa
#>
#> $`180`
#> Cluster Record [id 180]
#> - [direct] type
#> - [AY449057.1] seed sequence
#> - [3] sequences
#> - [1] taxa
#>
#> $`181`
#> Cluster Record [id 181]
#> - [direct] type
#> - [MF632276.1] seed sequence
#> - [3] sequences
#> - [1] taxa
#>
#> $`182`
#> Cluster Record [id 182]
#> - [subtree] type
#> - [HM759274.1] seed sequence
#> - [3] sequences
#> - [2] taxa
#>
#> $`183`
#> Cluster Record [id 183]
#> - [subtree] type
#> - [AF338376.1] seed sequence
#> - [3] sequences
#> - [2] taxa
#>
# access cluster records [[
(clstrarc[[clstrarc@ids[[1]]]]) # first cluster record
#> Cluster Record [id 0]
#> - [subtree] type
#> - [AF129795.1] seed sequence
#> - [173] sequences
#> - [5] taxa
# generate new cluster archives with [
(clstrarc[clstrarc@ids[1:10]]) # first 10 clusters
#> Archive of cluster record(s)
#> - [10] clusters