Reset parameters after running setup().
Arguments
- wd
Working directory
- parameters
Parameters to be changed, vector.
- values
New values for each parameter, vector.
See also
Other run-public:
ClstrArc-class,
ClstrRec-class,
Phylota-class,
SeqArc-class,
SeqRec-class,
TaxDict-class,
TaxRec-class,
clusters2_run(),
clusters_run(),
reset(),
restart(),
run(),
setup(),
taxise_run()
Examples
if (FALSE) {
# Note: this example requires BLAST and internet to run.
# example with temp folder
wd <- file.path(tempdir(), 'aotus')
# setup for aotus, make sure aotus/ folder already exists
if (!dir.exists(wd)) {
dir.create(wd)
}
ncbi_dr <- '[SET BLAST+ BIN PATH HERE]'
setup(wd = wd, txid = 9504, ncbi_dr = ncbi_dr) # txid for Aotus primate genus
# run
# run(wd = wd) # not running in test
# use ctrl+c or Esc to kill
# change parameters, e.g. min and max sequence lengths
parameters_reset(wd = 'aotus', parameters = c('mnsql', 'mxsql'),
values = c(300, 1500))
# see ?parameters
# restart
restart(wd = wd)
}