Uses seed sequence BLAST results and IDs to join clusters identified as sisters into single clusters. Resulting object is of joined clusters, merging is required to reformat the clusters for subsequent analysis.
Arguments
- blast_res
Seed sequence BLAST results
- seed_ids
Seed sequence IDs
- all_clstrs
List of all clusters
- ps
Parameters list, generated with parameters()
See also
Other run-private:
batcher(),
blast_clstr(),
blast_filter(),
blast_setup(),
blast_sqs(),
blastcache_load(),
blastcache_save(),
blastdb_gen(),
blastn_run(),
cache_rm(),
cache_setup(),
clade_select(),
clstr2_calc(),
clstr_all(),
clstr_direct(),
clstr_sqs(),
clstr_subtree(),
clstrarc_gen(),
clstrarc_join(),
clstrrec_gen(),
clstrs_calc(),
clstrs_merge(),
clstrs_renumber(),
clstrs_save(),
cmdln(),
descendants_get(),
download_obj_check(),
error(),
gb_extract(),
hierarchic_download(),
info(),
ncbicache_load(),
ncbicache_save(),
obj_check(),
obj_load(),
obj_save(),
outfmt_get(),
parameters_load(),
parameters_setup(),
parent_get(),
progress_init(),
progress_read(),
progress_reset(),
progress_save(),
rank_get(),
rawseqrec_breakdown(),
safely_connect(),
search_and_cache(),
searchterm_gen(),
seeds_blast(),
seq_download(),
seqarc_gen(),
seqrec_augment(),
seqrec_convert(),
seqrec_gen(),
seqrec_get(),
sids_check(),
sids_get(),
sids_load(),
sids_save(),
sqs_count(),
sqs_save(),
stage_args_check(),
stages_run(),
tax_download(),
taxdict_gen(),
taxtree_gen(),
txids_get(),
txnds_count(),
warn()