Return a TreeMan
or TreeMen
object from a .trmn treefile
Arguments
- file
file path
- wndmtrx
T/F add node matrix? Default FALSE.
- parallel
logical, make parallel?
- progress
name of the progress bar to use, see
create_progress_bar
Details
Read a tree(s) from a file using the .trmn format. It is faster to read and write tree files using treeman with the .trmn file format. In addition it is possible to encode more information than possible with the Newick, e.g. any taxonomic information and additional slot names added to the tree are recorded in the file.
Examples
tree <- randTree(10)
writeTrmn(tree, file = "test.trmn")
tree <- readTrmn("test.trmn")
file.remove("test.trmn")
#> [1] TRUE