Set a user defined slot for multiple nodes

Return a tree with a user defined slot for node IDs.

Usage

setNdsOther(tree, ids, vals, slt_nm, parallel = FALSE, progress = "none")

Arguments

tree

TreeMan object

ids

id sof the nodes

vals

data for slot

slt_nm

slot name

parallel

logical, make parallel?

progress

name of the progress bar to use, see create_progress_bar

Details

Runs setNdOther() over multiple nodes. Parellizable.

See also

setNdOther https://github.com/DomBennett/treeman/wiki/set-methods

Examples

tree <- randTree(10)
# e.g. confidences for nodes
vals <- runif(min = 0, max = 1, n = tree["nall"])
tree <- setNdsOther(tree, tree["all"], vals, "confidence")
tree <- updateSlts(tree)
summary(tree)
#> Tree (TreeMan Object):
#>   + 10 tips
#>   + 9 internal nodes
#>   + Binary
#>   + PD 9.04
#>   + Root node is "n1"
#>   + With additional node slots:
#>     [confidence]
(getNdsSlt(tree, ids = tree["all"], slt_nm = "confidence"))
#>         n1         n2         n3         n4         n5         n6         n7 
#> 0.28263233 0.08221919 0.76798166 0.54609278 0.22432895 0.81395821 0.47604892 
#>         n8         n9         t1         t2         t3         t4         t5 
#> 0.51545629 0.52905902 0.48469526 0.13730928 0.79144731 0.13076820 0.51335684 
#>         t6         t7         t8         t9        t10 
#> 0.48031755 0.74643682 0.31558121 0.41289983 0.37417567