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Import taxonomic database tables

Source: R/tl_import.R
tl_import.Rd

Downloads the requested taxonomic data tables and return a local path to the data in tsv.gz format. Downloads are cached and identified by content hash so that tl_import will not attempt to download the same file multiple times.

Usage

tl_import(
  provider = getOption("tl_default_provider", "itis"),
  schema = c("dwc", "common"),
  version = latest_version(),
  prov = prov_cache()
)

Arguments

provider

from which provider should the hierarchy be returned? Default is 'itis', which can also be configured using options(default_taxadb_provider=..."). See [td_create] for a list of recognized providers.

schema

One of "dwc" (for Darwin Core data) or "common" (for the Common names table.)

version

Which version of the taxadb provider database should we use? defaults to latest. See tl_import for details.

prov

Address (URL) to provenance record

Value

path(s) to the downloaded files in the cache

Details

tl_import parses a schema.org record to determine the correct version to download. If offline, tl_import will attempt to resolve against it's own provenance cache. Users can also examine / parse the prov JSON-LD file directly to determine the provenance of the data products used.