Package index • taxadb

All functions

clean_names(): Clean taxonomic names

common_contains(): common name starts with

common_starts_with(): common name starts with

filter_by(): Creates a data frame with column name given by by, and values given by the vector x, and then uses this table to do a filtering join, joining on the by column to return all rows matching the x values (scientificNames, taxonIDs, etc).

filter_common(): Look up taxonomic information by common name

filter_id(): Return a taxonomic table matching the requested ids

filter_name(): Look up taxonomic information by scientific name

filter_rank(): Get all members (descendants) of a given rank level

fuzzy_filter(): Match names that start or contain a specified text string

get_ids(): get_ids

get_names(): get_names

name_contains(): return all taxa in which scientific name contains the text provided

name_starts_with(): scientific name starts with

taxa_tbl(): Return a reference to a given table in the taxadb database

taxadb_dir(): Show the taxadb directory

td_connect(): Connect to the taxadb database

td_create(): create a local taxonomic database

td_disconnect(): Disconnect from the taxadb database.

tl_import(): Import taxonomic database tables