Package index
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available_providers() - Name providers available for a given version
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available_versions() - Versions of the taxadb data available
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build_col() - Rebuild the Catalogue of Life snapshot
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build_dir() - Where build inputs and outputs are kept
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build_fishbase() - Rebuild the FishBase or SeaLifeBase snapshot
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build_gbif() - Rebuild the GBIF backbone snapshot
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build_itis() - Rebuild the ITIS snapshot
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build_ncbi() - Rebuild the NCBI Taxonomy snapshot
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build_ott() - Rebuild the Open Tree Taxonomy snapshot
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clean_names() - Clean taxonomic names
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common_contains() - common name starts with
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common_starts_with() - common name starts with
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filter_by() - Creates a data frame with column name given by
by, and values given by the vectorx, and then uses this table to do a filtering join, joining on thebycolumn to return all rows matching thexvalues (scientificNames, taxonIDs, etc). -
filter_common() - Look up taxonomic information by common name
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filter_id() - Return a taxonomic table matching the requested ids
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filter_name() - Look up taxonomic information by scientific name
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filter_rank() - Get all members (descendants) of a given rank level
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fuzzy_filter() - Match names that start or contain a specified text string
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get_ids() - get_ids
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get_names() - get_names
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latest_version() - The most recent taxadb snapshot version
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list_snapshots() - List the taxonomic snapshots available from the taxadb repository
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name_contains() - return all taxa in which scientific name contains the text provided
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name_starts_with() - scientific name starts with
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taxa_tbl() - Return a reference to a given table in the taxadb database
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taxadb_dir() - Show the local taxadb directory
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taxadb_provider_info() - Describe the taxonomic name providers
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taxadb_providers() - Providers taxadb can rebuild
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taxadb_repo() - The taxadb data repository
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taxadb_uri() - Locate the Parquet files backing a taxadb table
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td_build() - Rebuild taxadb snapshots from the providers
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td_connect() - Connect to the taxadb database
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td_create() - Create a local taxadb database
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td_disconnect() - Disconnect from the taxadb database.
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td_download() - Install a local copy of a taxadb snapshot
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td_manifest() - Describe a built snapshot
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td_validate() - Check a taxadb table against the taxadb Darwin Core rules
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td_write_metadata() - Write the metadata published with a snapshot