children |
Get direct children |
NCBI, ITIS |
classification |
Upstream classification |
NCBI, ITIS, Tropicos, EOL, GBIF, NBN |
comm2sci |
Get scientific from common names |
EOL, NCBI, ITIS, Tropicos |
downstream |
Downstream taxa to specified rank |
ITIS, GBIF |
get_ids |
Get taxonomic identifiers |
NCBI, ITIS, Tropicos, EOL, GBIF, NBN |
resolve |
Resolve names using many resolvers |
GNR, iPlant |
gnr_resolve |
Resolve names using Global Names Resolver |
GNR |
tol_resolve |
Resolve names using any resolver |
TOL |
iplant_resolve |
iPlant name resolution |
iPlant |
sci2comm |
Get common from scientific names |
EOL, NCBI, ITIS |
synonyms |
Retrieve synonyms given input names/identifiers |
NCBI, ITIS, Tropicos |
upstream |
Retrieve upstream taxa given names/identifiers |
ITIS |
lowest_common |
Retrieve the lowest common taxon and rank for a given taxon name or
ID |
ITIS, GBIF, TOL, NCBI |
genbank2uid |
Get NCBI taxonomy UID from GenBankID |
NCBI |
tax_name |
Get taxonomic names for a given rank |
NCBI, ITIS |
tax_rank |
Get rank for a given taxonomic name |
BOLD, EOL, GBIF, NATSERV, NBN, TOL, TROPICOS, ITIS, NCBI, WORMS |
tpl_get |
Get The Plant List csv files |
TPL |
