Package index

All functions

anolis

Anole data

as.treedata.table()

Combine tree (or set of trees) and data.frame into a single treedata.table object

detectAllCharacters()

Apply detectCharacterType over an entire matrix

detectCharacterType()

Function to detect whether a character is continuous or discrete

droptreedata.table()

Function dropping taxa from an object of class treedata.table

extractVector()

Returning a named vector from a treedata.table object

filterMatrix()

Filter a character matrix, returning either all continuous or all discrete characters

forceNames()

Force names for rows, columns, or both

hasNames()

Row and column name check

head(<treedata.table>)

Return the first part of an treedata.table object

print(<treedata.table>)

Print method treedata.table objects

pulltreedata.table()

Returns the character matrix or phylogeny from a treedata.table object

`[`(<treedata.table>)

Function for performing data.table operations on an object of class treedata.table

`[[`(<treedata.table>)

Function for extract a named vector from an object of class treedata.table

summary(<treedata.table>)

Summarizing treedata.table objects

tail(<treedata.table>)

Return the last part of an treedata.table object

tdt()

Run a function on a treedata.table object