read.beast

read beast/mrbayes/mega Nexus output

read.beast(file)

read.mrbayes(file)

read.mega(file)

Arguments

file	beast file

Value

treedata object

Author

Guangchuang Yu https://guangchuangyu.github.io

Examples

file <- system.file("extdata/BEAST", "beast_mcc.tree", package="treeio")
read.beast(file)
#> 'treedata' S4 object that stored information of
#> 	'/cache/treeio/extdata/BEAST/beast_mcc.tree'.
#> 
#> [email protected] phylo: 
#> Phylogenetic tree with 15 tips and 14 internal nodes.
#> 
#> Tip labels:
#>   A_1995, B_1996, C_1995, D_1987, E_1996, F_1997, ...
#> 
#> Rooted; includes branch lengths.
#> 
#> with the following features available:
#> 	'height',	'height_0.95_HPD',	'height_median',	'height_range',	'length',
#> 	'length_0.95_HPD',	'length_median',	'length_range',	'posterior',	'rate',
#> 	'rate_0.95_HPD',	'rate_median',	'rate_range'.