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All functions

Nnode(<treedata>)
Nnode
as.treedata(<phylo>) as.treedata(<pml>)
as.treedata
as.ultrametric()
as.ultrametric
read.beast() read.mrbayes() read.beast.newick() read.mega()
read.beast
drop.tip() drop.tip()
drop.tip method
get.placements()
get.placements
get.tree()
get.tree
get.treetext()
get.treetext method
getNodeNum() Nnode2()
getNodeNum
is.ggtree()
is.ggtree
isTip()
isTip
jplace-class
Class "jplace" This class stores phylogenetic placements
label_branch_paml()
label_branch_paml
mask()
mask
merge_tree()
merge_tree
print(<treedataList>)
print
raxml2nwk()
raxml2nwk
read.jtree()
read.jtree
read.astral()
read.astral
read.codeml()
read.codeml
read.codeml_mlc()
read.codeml_mlc
read.fasta()
read.fasta
read.hyphy()
read.hyphy
read.hyphy.seq()
read.hyphy.seq
read.iqtree()
read.iqtree
read.jplace()
read.jplace
read.mcmctree()
read.mcmctree
read.mega_tabular()
read.mega_tabular
read.newick()
read.newick
read.nhx()
read.nhx
read.paml_rst()
read.paml_rst
read.phylip()
read.phylip
read.phylip.seq()
read.phylip.seq
read.phylip.tree()
read.phylip.tree
read.phyloxml()
read.phyloxml
read.r8s()
read.r8s
read.raxml()
read.raxml
read.treeqza()
read.treeqza
rename_taxa()
rename_taxa
rescale_tree()
rescale_tree
root(<treedata>)
root
tree_subset()
Subset tree objects by related nodes
write.jtree()
write.jtree
write.beast()
write.beast
write.beast.newick()
write.beast.newick