read mlc file of codeml output

read.codeml_mlc(mlcfile)

Arguments

mlcfile

mlc file

Value

A codeml_mlc object

Author

Guangchuang Yu

Examples

mlcfile <- system.file("extdata/PAML_Codeml", "mlc", package="treeio") read.codeml_mlc(mlcfile)
#> 'treedata' S4 object that stored information of #> '/cache/treeio/extdata/PAML_Codeml/mlc'. #> #> [email protected] phylo: #> Phylogenetic tree with 15 tips and 13 internal nodes. #> #> Tip labels: #> A, B, C, D, E, F, ... #> Node labels: #> 16, 17, 18, 19, 20, 21, ... #> #> Unrooted; includes branch lengths. #> #> with the following features available: #> 't', 'N', 'S', 'dN_vs_dS', 'dN', 'dS', 'N_x_dN', 'S_x_dS'.