read jplace file

read.jplace(file)

Arguments

file

jplace file

Value

jplace instance

Author

Guangchuang Yu

Examples

jp <- system.file("extdata", "sample.jplace", package="treeio")
read.jplace(jp)
#> 'treedata' S4 object that stored information
#> of
#> 	'/usr/local/lib/R/site-library/treeio/extdata/sample.jplace'.
#> 
#> [email protected] phylo:
#> 
#> Phylogenetic tree with 13 tips and 12 internal nodes.
#> 
#> Tip labels:
#>   A, B, C, D, E, F, ...
#> 
#> Rooted; includes branch lengths.
#> 
#> with the following features available:
#>   'nplace'.
#> 
#> # The associated data tibble abstraction: 25 × 4
#> # The 'node', 'label' and 'isTip' are from the phylo tree.
#>     node label isTip nplace
#>    <int> <chr> <lgl>  <dbl>
#>  1     1 A     TRUE       0
#>  2     2 B     TRUE       0
#>  3     3 C     TRUE       0
#>  4     4 D     TRUE       0
#>  5     5 E     TRUE       0
#>  6     6 F     TRUE       1
#>  7     7 G     TRUE       0
#>  8     8 H     TRUE       0
#>  9     9 I     TRUE       0
#> 10    10 J     TRUE       0
#> # … with 15 more rows