read.phyloxml
Examples
xmlfile1 <- system.file("extdata/phyloxml", "test_x2.xml", package="treeio")
px1 <- read.phyloxml(xmlfile1)
px1
#> 'treedata' S4 object that stored information
#> of
#> '/usr/local/lib/R/site-library/treeio/extdata/phyloxml/test_x2.xml'.
#>
#> ...@ phylo:
#>
#> Phylogenetic tree with 10 tips and 9 internal nodes.
#>
#> Tip labels:
#> t7, t2, t3, t8, t1, t5, ...
#>
#> Rooted; no branch lengths.
#>
#> with the following features available:
#> ''.
#>
#> # The associated data tibble abstraction: 19 × 3
#> # The 'node', 'label' and 'isTip' are from the phylo tree.
#> node label isTip
#> <dbl> <chr> <lgl>
#> 1 1 t7 TRUE
#> 2 2 t2 TRUE
#> 3 3 t3 TRUE
#> 4 4 t8 TRUE
#> 5 5 t1 TRUE
#> 6 6 t5 TRUE
#> 7 7 t6 TRUE
#> 8 8 t9 TRUE
#> 9 9 t10 TRUE
#> 10 10 t4 TRUE
#> # ℹ 9 more rows
xmlfile2 <- system.file("extdata/phyloxml", "phyloxml_examples.xml", package="treeio")
px2 <- read.phyloxml(xmlfile2)
px2
#> 13 phylogenetic trees