treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

See also

Useful links:

• https://github.com/YuLab-SMU/treeio (devel)

• https://docs.ropensci.org/treeio/ (docs)

• https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/ (book)

• doi:10.1093/molbev/msz240 (paper)

• Report bugs at https://github.com/YuLab-SMU/treeio/issues

Author

Maintainer: Guangchuang Yu guangchuangyu@gmail.com (ORCID)

Other contributors:

• Tommy Tsan-Yuk Lam tylam.tommy@gmail.com [contributor, thesis advisor]

• Shuangbin Xu xshuangbin@163.com (ORCID) [contributor]

• Bradley Jones brj1@sfu.ca [contributor]

• Casey Dunn casey_dunn@brown.edu [contributor]

• Tyler Bradley tcb85@drexel.edu [contributor]

• Konstantinos Geles konstantinos.geles@studenti.unicz.it [contributor]