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Identify Fossils with equal min and max age

Source: R/cf_equal.R
cf_equal.Rd

Removes or flags records with equal minimum and maximum age.

Usage

cf_equal(
  x,
  min_age = "min_ma",
  max_age = "max_ma",
  value = "clean",
  verbose = TRUE
)

Arguments

x

data.frame. Containing fossil records with taxon names, ages, and geographic coordinates.

min_age

character string. The column with the minimum age. Default = “min_ma”.

max_age

character string. The column with the maximum age. Default = “max_ma”.

value

character string. Defining the output value. See value.

verbose

logical. If TRUE reports the name of the test and the number of records flagged.

Value

Depending on the ‘value’ argument, either a data.frame containing the records considered correct by the test (“clean”) or a logical vector (“flagged”), with TRUE = test passed and FALSE = test failed/potentially problematic . Default = “clean”.

Note

See https://ropensci.github.io/CoordinateCleaner/ for more details and tutorials.

See also

Other fossils: cf_age(), cf_outl(), cf_range(), write_pyrate()

Examples


minages <- runif(n = 10, min = 0.1, max = 25)
x <- data.frame(species = letters[1:10], 
                min_ma = minages, 
                max_ma = minages + runif(n = 10, min = 0, max = 10))
x <- rbind(x, data.frame(species = "z", 
                min_ma = 5, 
                max_ma = 5))
                
cf_equal(x, value = "flagged")
#> Testing age validity
#> Flagged 1 records.
#>  [1]  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE FALSE