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Find normalised receptor responses

Source: R/get_normalized_responses.R
get_normalized_responses.Rd

given a chemical, get normalised receptor responses from all studies in the database.

Usage

get_normalized_responses(odors, zero = door_default_values("zero"),
  response_matrix = door_default_values("door_response_matrix"), round = 3,
  na.rm = FALSE)

Arguments

odors

character vector, one or more odors provided as InChIKey.

zero

InChIKey of background that should be set to zero. The default is "SFR", i.e. the spontaneous firing rate.

response_matrix

a data frame, as e.g. "door_response_matrix" that is loaded by model_response. It is also possible to create this frame manually using model_response.

round

numeric, round to this amount of digits, set to NA if you do not want to round

na.rm

logical, remove NAs?

See also

model_response,create_door_database

Author

Daniel Münch daniel.muench@uni-konstanz.de

Examples

# load data
library(DoOR.data)
data(door_response_matrix)

# define a list of odorants
odors <- c("MLFHJEHSLIIPHL-UHFFFAOYSA-N",
           "OBNCKNCVKJNDBV-UHFFFAOYSA-N",
           "IKHGUXGNUITLKF-UHFFFAOYSA-N")

# get the normalized responses for these odorants
result <- get_normalized_responses(odors, 
                                   response_matrix = door_response_matrix)