Import or update new data and update
door_global_normalization_weights, door_response_range,
odor, ORs and receptor data frames.
Usage
import_new_data(file.name,
dataFormat = door_default_values("door_data_format"),
odor_data = door_default_values("odor"),
weightGlobNorm = door_default_values("door_global_normalization_weights"),
responseRange = door_default_values("door_response_range"),
receptors = door_default_values("ORs"),
ident = door_default_values("ident"), round = 3)Arguments
- file.name
character string, the name of given file that contains response values of one or more odorant receptors, either a .csv or .txt file.
- dataFormat
data frame, a data frame does not contain any response value but odorant information.
- odor_data
data frame, contains the odorant information.
- weightGlobNorm
data matrix, indicates whether given receptor has been measured by given study.
- responseRange
data frame, contains the information about response range of each study and how many odors have been measured in each study.
- receptors
data frame, contains the receptor and OSN names and their expression.
- ident
the identifier used for matching, usually the InChIKey is used.
- round
the number of digits the imported values are rounded to.
Details
import_new_data is used to import new data into database. If
the data contains a new receptor or ORN, then build a new data frame for this
receptor or ORN. If the data contains a receptor that is already present in
database, then merge the imported data into old data frame. The information
(e.g. response range, how many receptors and odors were measured from given
study) will be integrated into data door_response_range, odor,
ORs and door_global_normalization_weights. If an existing study
is imported, remove_study will be run first in order to perform
an update.