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Remove a study from DoOR

Source: R/remove_study.R
remove_study.Rd

Use this function to remove a study from the DoOR database. import_new_data.R uses this function when it detects an existing study during the import process (e.g. because you imported updated data).

Usage

remove_study(study, receptors = door_default_values("ORs"),
  responseRange = door_default_values("door_response_range"),
  weightGlobNorm = door_default_values("door_global_normalization_weights"))

Arguments

study

a string containing the name of the study you want to remove (e.g. 'Bruyne.2001.WT')

receptors

a vector of all the receptors to be checked. Defaults to all receptors exidting in DoOR.

responseRange

the dataframe containing the info about the response ranges of all studies (door_response_range)

weightGlobNorm

the dataframe containing the info about the relative weights between receptors (door_global_normalization_weights)

See also

import_new_data

Author

Daniel Münch <daniel.muench@uni-konstanz.de>

Examples

# load data
library(DoOR.data)
load_door_data(nointeraction = TRUE)

# remove Bruyne.2001.WT from DoOR
remove_study('Bruyne.2001.WT')
#> removed Bruyne.2001.WT from Or7a .
#> removed Bruyne.2001.WT from Or10a .
#> removed Bruyne.2001.WT from Or13a .
#> removed Bruyne.2001.WT from Or22a .
#> removed Bruyne.2001.WT from Or42b .
#> removed Bruyne.2001.WT from Or49b .
#> removed Bruyne.2001.WT from Or59b .
#> removed Bruyne.2001.WT from Or67c .
#> removed Bruyne.2001.WT from Or82a .
#> removed Bruyne.2001.WT from Or85b .
#> removed Bruyne.2001.WT from Or92a .
#> removed Bruyne.2001.WT from Or98a .
#> removed Bruyne.2001.WT from Gr21a.Gr63a .
#> removed Bruyne.2001.WT from ab2B .
#> removed Bruyne.2001.WT from ab4B .
#> removed Bruyne.2001.WT from ab5B .
#> removed Bruyne.2001.WT from 'door_response_range'
#> removed Bruyne.2001.WT from 'door_global_normalization_weights'