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Get datasets of XenaHub object

Usage

datasets(x)

Arguments

x

a XenaHub object

Value

a character vector contains datasets

Examples

xe = XenaGenerate(subset = XenaHostNames == "tcgaHub"); datasets(xe)
#>   [1] "TCGA.OV.sampleMap/HumanMethylation27"                                                                            
#>   [2] "TCGA.OV.sampleMap/HumanMethylation450"                                                                           
#>   [3] "TCGA.OV.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                  
#>   [4] "TCGA.OV.sampleMap/OV_clinicalMatrix"                                                                             
#>   [5] "TCGA.OV.sampleMap/RPPA_RBN"                                                                                      
#>   [6] "TCGA.OV.sampleMap/HT_HG-U133A"                                                                                   
#>   [7] "TCGA.OV.sampleMap/HiSeqV2_percentile"                                                                            
#>   [8] "TCGA.OV.sampleMap/HiSeqV2_PANCAN"                                                                                
#>   [9] "TCGA.OV.sampleMap/HiSeqV2"                                                                                       
#>  [10] "TCGA.OV.sampleMap/HiSeq"                                                                                         
#>  [11] "TCGA.OV.sampleMap/SNP6_nocnv_genomicSegment"                                                                     
#>  [12] "TCGA.OV.sampleMap/miRNA_HiSeq_gene"                                                                              
#>  [13] "TCGA.OV.sampleMap/AgilentG4502A_07_2"                                                                            
#>  [14] "TCGA.OV.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                           
#>  [15] "TCGA.OV.sampleMap/HiSeq_exon"                                                                                    
#>  [16] "TCGA.OV.sampleMap/RPPA"                                                                                          
#>  [17] "TCGA.OV.sampleMap/SNP6_genomicSegment"                                                                           
#>  [18] "TCGA.OV.sampleMap/TCGA_OV_gene_expression_subtype"                                                               
#>  [19] "TCGA.OV.sampleMap/HiSeqV2_exon"                                                                                  
#>  [20] "TCGA.OV.sampleMap/AgilentG4502A_07_3"                                                                            
#>  [21] "RABIT/separate_processed/RABIT_OV.Agilent"                                                                       
#>  [22] "RABIT/separate_processed/RABIT_OV.U133A"                                                                         
#>  [23] "merge_merged_reals/OV_merge_merged_reals.txt"                                                                    
#>  [24] "mc3/OV_mc3.txt"                                                                                                  
#>  [25] "mc3_gene_level/OV_mc3_gene_level.txt"                                                                            
#>  [26] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/OV_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"  
#>  [27] "survival/OV_survival.txt"                                                                                        
#>  [28] "TCGA.KIRC.sampleMap/HumanMethylation27"                                                                          
#>  [29] "TCGA.KIRC.sampleMap/HumanMethylation450"                                                                         
#>  [30] "TCGA.KIRC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#>  [31] "TCGA.KIRC.sampleMap/RPPA_RBN"                                                                                    
#>  [32] "TCGA.KIRC.sampleMap/HiSeqV2_percentile"                                                                          
#>  [33] "TCGA.KIRC.sampleMap/KIRC_clinicalMatrix"                                                                         
#>  [34] "TCGA.KIRC.sampleMap/miRNA_GA_gene"                                                                               
#>  [35] "TCGA.KIRC.sampleMap/HiSeqV2_PANCAN"                                                                              
#>  [36] "TCGA.KIRC.sampleMap/HiSeqV2"                                                                                     
#>  [37] "TCGA.KIRC.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#>  [38] "TCGA.KIRC.sampleMap/miRNA_HiSeq_gene"                                                                            
#>  [39] "TCGA.KIRC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#>  [40] "TCGA.KIRC.sampleMap/RPPA"                                                                                        
#>  [41] "TCGA.KIRC.sampleMap/SNP6_genomicSegment"                                                                         
#>  [42] "TCGA.KIRC.sampleMap/HiSeqV2_exon"                                                                                
#>  [43] "TCGA.KIRC.sampleMap/AgilentG4502A_07_3"                                                                          
#>  [44] "RABIT/separate_processed/RABIT_KIRC.HiSeq.V2"                                                                    
#>  [45] "RABIT/separate_processed/RABIT_KIRC.HiSeq"                                                                       
#>  [46] "merge_merged_reals/KIRC_merge_merged_reals.txt"                                                                  
#>  [47] "mc3/KIRC_mc3.txt"                                                                                                
#>  [48] "mc3_gene_level/KIRC_mc3_gene_level.txt"                                                                          
#>  [49] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/KIRC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#>  [50] "survival/KIRC_survival.txt"                                                                                      
#>  [51] "TCGA.LGG.sampleMap/HumanMethylation450"                                                                          
#>  [52] "TCGA.LGG.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                 
#>  [53] "TCGA.LGG.sampleMap/oneoff_TCGA_LGG_MethylMix"                                                                    
#>  [54] "TCGA.LGG.sampleMap/HiSeqV2_percentile"                                                                           
#>  [55] "TCGA.LGG.sampleMap/HiSeqV2_PANCAN"                                                                               
#>  [56] "TCGA.LGG.sampleMap/HiSeqV2"                                                                                      
#>  [57] "TCGA.LGG.sampleMap/SNP6_nocnv_genomicSegment"                                                                    
#>  [58] "TCGA.LGG.sampleMap/miRNA_HiSeq_gene"                                                                             
#>  [59] "TCGA.LGG.sampleMap/LGG_clinicalMatrix"                                                                           
#>  [60] "TCGA.LGG.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                          
#>  [61] "TCGA.LGG.sampleMap/RPPA"                                                                                         
#>  [62] "TCGA.LGG.sampleMap/SNP6_genomicSegment"                                                                          
#>  [63] "TCGA.LGG.sampleMap/HiSeqV2_exon"                                                                                 
#>  [64] "TCGA.LGG.sampleMap/AgilentG4502A_07_3"                                                                           
#>  [65] "merge_merged_reals/LGG_merge_merged_reals.txt"                                                                   
#>  [66] "mc3/LGG_mc3.txt"                                                                                                 
#>  [67] "mc3_gene_level/LGG_mc3_gene_level.txt"                                                                           
#>  [68] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LGG_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt" 
#>  [69] "survival/LGG_survival.txt"                                                                                       
#>  [70] "RABIT/separate_processed/RABIT_KIRP.HiSeq.V2"                                                                    
#>  [71] "TCGA.KIRP.sampleMap/HumanMethylation27"                                                                          
#>  [72] "TCGA.KIRP.sampleMap/HumanMethylation450"                                                                         
#>  [73] "TCGA.KIRP.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#>  [74] "TCGA.KIRP.sampleMap/HiSeqV2_percentile"                                                                          
#>  [75] "TCGA.KIRP.sampleMap/miRNA_GA_gene"                                                                               
#>  [76] "TCGA.KIRP.sampleMap/HiSeqV2_PANCAN"                                                                              
#>  [77] "TCGA.KIRP.sampleMap/HiSeqV2"                                                                                     
#>  [78] "TCGA.KIRP.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#>  [79] "TCGA.KIRP.sampleMap/miRNA_HiSeq_gene"                                                                            
#>  [80] "TCGA.KIRP.sampleMap/KIRP_clinicalMatrix"                                                                         
#>  [81] "TCGA.KIRP.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#>  [82] "TCGA.KIRP.sampleMap/RPPA"                                                                                        
#>  [83] "TCGA.KIRP.sampleMap/SNP6_genomicSegment"                                                                         
#>  [84] "TCGA.KIRP.sampleMap/HiSeqV2_exon"                                                                                
#>  [85] "TCGA.KIRP.sampleMap/AgilentG4502A_07_3"                                                                          
#>  [86] "merge_merged_reals/KIRP_merge_merged_reals.txt"                                                                  
#>  [87] "mc3/KIRP_mc3.txt"                                                                                                
#>  [88] "mc3_gene_level/KIRP_mc3_gene_level.txt"                                                                          
#>  [89] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/KIRP_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#>  [90] "survival/KIRP_survival.txt"                                                                                      
#>  [91] "TCGA.PANCAN.sampleMap/HumanMethylation27"                                                                        
#>  [92] "TCGA.PANCAN.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                              
#>  [93] "TCGA.PANCAN.sampleMap/miRNA_GA_gene"                                                                             
#>  [94] "TCGA.PANCAN.sampleMap/miRNA_HiSeq_gene"                                                                          
#>  [95] "TCGA.PANCAN.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                       
#>  [96] "TCGA.PANCAN.sampleMap/SNP6_genomicSegment"                                                                       
#>  [97] "TCGA.PANCAN.sampleMap/HiSeqV2_exon"                                                                              
#>  [98] "RABIT/pancan/RABIT_pancan.HiSeq.V2"                                                                              
#>  [99] "RABIT/pancan/RABIT_pancan.HiSeq"                                                                                 
#> [100] "TCGA.CHOL.sampleMap/HumanMethylation450"                                                                         
#> [101] "TCGA.CHOL.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [102] "TCGA.CHOL.sampleMap/HiSeqV2_percentile"                                                                          
#> [103] "TCGA.CHOL.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [104] "TCGA.CHOL.sampleMap/HiSeqV2"                                                                                     
#> [105] "TCGA.CHOL.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [106] "TCGA.CHOL.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [107] "TCGA.CHOL.sampleMap/CHOL_clinicalMatrix"                                                                         
#> [108] "TCGA.CHOL.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [109] "TCGA.CHOL.sampleMap/RPPA"                                                                                        
#> [110] "TCGA.CHOL.sampleMap/SNP6_genomicSegment"                                                                         
#> [111] "TCGA.CHOL.sampleMap/HiSeqV2_exon"                                                                                
#> [112] "merge_merged_reals/CHOL_merge_merged_reals.txt"                                                                  
#> [113] "mc3/CHOL_mc3.txt"                                                                                                
#> [114] "mc3_gene_level/CHOL_mc3_gene_level.txt"                                                                          
#> [115] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/CHOL_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [116] "survival/CHOL_survival.txt"                                                                                      
#> [117] "TCGA.COADREAD.sampleMap/HumanMethylation27"                                                                      
#> [118] "TCGA.COADREAD.sampleMap/HumanMethylation450"                                                                     
#> [119] "TCGA.COADREAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                            
#> [120] "TCGA.COADREAD.sampleMap/RPPA_RBN"                                                                                
#> [121] "TCGA.COADREAD.sampleMap/HiSeqV2_PANCAN"                                                                          
#> [122] "TCGA.COADREAD.sampleMap/HiSeqV2"                                                                                 
#> [123] "TCGA.COADREAD.sampleMap/COADREAD_clinicalMatrix"                                                                 
#> [124] "TCGA.COADREAD.sampleMap/SNP6_nocnv_genomicSegment"                                                               
#> [125] "TCGA.COADREAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                     
#> [126] "TCGA.COADREAD.sampleMap/SNP6_genomicSegment"                                                                     
#> [127] "TCGA.COADREAD.sampleMap/HiSeqV2_exon"                                                                            
#> [128] "TCGA.COADREAD.sampleMap/AgilentG4502A_07_3"                                                                      
#> [129] "survival/COADREAD_survival.txt"                                                                                  
#> [130] "mc3/COADREAD_mc3.txt"                                                                                            
#> [131] "mc3_gene_level/COADREAD_mc3_gene_level.txt"                                                                      
#> [132] "TCGA.ACC.sampleMap/HumanMethylation450"                                                                          
#> [133] "TCGA.ACC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                 
#> [134] "TCGA.ACC.sampleMap/HiSeqV2_percentile"                                                                           
#> [135] "TCGA.ACC.sampleMap/HiSeqV2_PANCAN"                                                                               
#> [136] "TCGA.ACC.sampleMap/HiSeqV2"                                                                                      
#> [137] "TCGA.ACC.sampleMap/ACC_clinicalMatrix"                                                                           
#> [138] "TCGA.ACC.sampleMap/SNP6_nocnv_genomicSegment"                                                                    
#> [139] "TCGA.ACC.sampleMap/miRNA_HiSeq_gene"                                                                             
#> [140] "TCGA.ACC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                          
#> [141] "TCGA.ACC.sampleMap/RPPA"                                                                                         
#> [142] "TCGA.ACC.sampleMap/SNP6_genomicSegment"                                                                          
#> [143] "TCGA.ACC.sampleMap/HiSeqV2_exon"                                                                                 
#> [144] "merge_merged_reals/ACC_merge_merged_reals.txt"                                                                   
#> [145] "mc3/ACC_mc3.txt"                                                                                                 
#> [146] "mc3_gene_level/ACC_mc3_gene_level.txt"                                                                           
#> [147] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/ACC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt" 
#> [148] "survival/ACC_survival.txt"                                                                                       
#> [149] "RABIT/separate_processed/RABIT_CESC.HiSeq.V2"                                                                    
#> [150] "TCGA.CESC.sampleMap/HumanMethylation450"                                                                         
#> [151] "TCGA.CESC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [152] "TCGA.CESC.sampleMap/HiSeqV2_percentile"                                                                          
#> [153] "TCGA.CESC.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [154] "TCGA.CESC.sampleMap/HiSeqV2"                                                                                     
#> [155] "TCGA.CESC.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [156] "TCGA.CESC.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [157] "TCGA.CESC.sampleMap/CESC_clinicalMatrix"                                                                         
#> [158] "TCGA.CESC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [159] "TCGA.CESC.sampleMap/RPPA"                                                                                        
#> [160] "TCGA.CESC.sampleMap/SNP6_genomicSegment"                                                                         
#> [161] "TCGA.CESC.sampleMap/HiSeqV2_exon"                                                                                
#> [162] "merge_merged_reals/CESC_merge_merged_reals.txt"                                                                  
#> [163] "mc3/CESC_mc3.txt"                                                                                                
#> [164] "mc3_gene_level/CESC_mc3_gene_level.txt"                                                                          
#> [165] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/CESC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [166] "survival/CESC_survival.txt"                                                                                      
#> [167] "RABIT/separate_processed/RABIT_READ.HiSeq.V2"                                                                    
#> [168] "RABIT/separate_processed/RABIT_READ.Agilent"                                                                     
#> [169] "TCGA.READ.sampleMap/HumanMethylation27"                                                                          
#> [170] "TCGA.READ.sampleMap/GAV2"                                                                                        
#> [171] "TCGA.READ.sampleMap/HumanMethylation450"                                                                         
#> [172] "TCGA.READ.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [173] "TCGA.READ.sampleMap/RPPA_RBN"                                                                                    
#> [174] "TCGA.READ.sampleMap/HiSeqV2_percentile"                                                                          
#> [175] "TCGA.READ.sampleMap/miRNA_GA_gene"                                                                               
#> [176] "TCGA.READ.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [177] "TCGA.READ.sampleMap/HiSeqV2"                                                                                     
#> [178] "TCGA.READ.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [179] "TCGA.READ.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [180] "TCGA.READ.sampleMap/GAV2_exon"                                                                                   
#> [181] "TCGA.READ.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [182] "TCGA.READ.sampleMap/RPPA"                                                                                        
#> [183] "TCGA.READ.sampleMap/SNP6_genomicSegment"                                                                         
#> [184] "TCGA.READ.sampleMap/HiSeqV2_exon"                                                                                
#> [185] "TCGA.READ.sampleMap/READ_clinicalMatrix"                                                                         
#> [186] "TCGA.READ.sampleMap/AgilentG4502A_07_3"                                                                          
#> [187] "merge_merged_reals/READ_merge_merged_reals.txt"                                                                  
#> [188] "mc3/READ_mc3.txt"                                                                                                
#> [189] "mc3_gene_level/READ_mc3_gene_level.txt"                                                                          
#> [190] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/READ_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [191] "survival/READ_survival.txt"                                                                                      
#> [192] "TCGA.SARC.sampleMap/HumanMethylation450"                                                                         
#> [193] "TCGA.SARC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [194] "TCGA.SARC.sampleMap/SARC_clinicalMatrix"                                                                         
#> [195] "TCGA.SARC.sampleMap/HiSeqV2_percentile"                                                                          
#> [196] "TCGA.SARC.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [197] "TCGA.SARC.sampleMap/HiSeqV2"                                                                                     
#> [198] "TCGA.SARC.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [199] "TCGA.SARC.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [200] "TCGA.SARC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [201] "TCGA.SARC.sampleMap/RPPA"                                                                                        
#> [202] "TCGA.SARC.sampleMap/SNP6_genomicSegment"                                                                         
#> [203] "TCGA.SARC.sampleMap/HiSeqV2_exon"                                                                                
#> [204] "merge_merged_reals/SARC_merge_merged_reals.txt"                                                                  
#> [205] "mc3/SARC_mc3.txt"                                                                                                
#> [206] "mc3_gene_level/SARC_mc3_gene_level.txt"                                                                          
#> [207] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/SARC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [208] "survival/SARC_survival.txt"                                                                                      
#> [209] "TCGA.DLBC.sampleMap/HumanMethylation450"                                                                         
#> [210] "TCGA.DLBC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [211] "TCGA.DLBC.sampleMap/DLBC_clinicalMatrix"                                                                         
#> [212] "TCGA.DLBC.sampleMap/HiSeqV2_percentile"                                                                          
#> [213] "TCGA.DLBC.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [214] "TCGA.DLBC.sampleMap/HiSeqV2"                                                                                     
#> [215] "TCGA.DLBC.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [216] "TCGA.DLBC.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [217] "TCGA.DLBC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [218] "TCGA.DLBC.sampleMap/RPPA"                                                                                        
#> [219] "TCGA.DLBC.sampleMap/SNP6_genomicSegment"                                                                         
#> [220] "TCGA.DLBC.sampleMap/HiSeqV2_exon"                                                                                
#> [221] "merge_merged_reals/DLBC_merge_merged_reals.txt"                                                                  
#> [222] "mc3/DLBC_mc3.txt"                                                                                                
#> [223] "mc3_gene_level/DLBC_mc3_gene_level.txt"                                                                          
#> [224] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/DLBC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [225] "survival/DLBC_survival.txt"                                                                                      
#> [226] "TCGA.PRAD.sampleMap/HumanMethylation450"                                                                         
#> [227] "TCGA.PRAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [228] "TCGA.PRAD.sampleMap/HiSeqV2_percentile"                                                                          
#> [229] "TCGA.PRAD.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [230] "TCGA.PRAD.sampleMap/HiSeqV2"                                                                                     
#> [231] "TCGA.PRAD.sampleMap/PRAD_clinicalMatrix"                                                                         
#> [232] "TCGA.PRAD.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [233] "TCGA.PRAD.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [234] "TCGA.PRAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [235] "TCGA.PRAD.sampleMap/RPPA"                                                                                        
#> [236] "TCGA.PRAD.sampleMap/SNP6_genomicSegment"                                                                         
#> [237] "TCGA.PRAD.sampleMap/HiSeqV2_exon"                                                                                
#> [238] "RABIT/separate_processed/RABIT_PRAD.HiSeq.V2"                                                                    
#> [239] "merge_merged_reals/PRAD_merge_merged_reals.txt"                                                                  
#> [240] "mc3/PRAD_mc3.txt"                                                                                                
#> [241] "mc3_gene_level/PRAD_mc3_gene_level.txt"                                                                          
#> [242] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/PRAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [243] "survival/PRAD_survival.txt"                                                                                      
#> [244] "TCGA.LUNG.sampleMap/HumanMethylation27"                                                                          
#> [245] "TCGA.LUNG.sampleMap/HumanMethylation450"                                                                         
#> [246] "TCGA.LUNG.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [247] "TCGA.LUNG.sampleMap/RPPA_RBN"                                                                                    
#> [248] "TCGA.LUNG.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [249] "TCGA.LUNG.sampleMap/HiSeqV2"                                                                                     
#> [250] "TCGA.LUNG.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [251] "TCGA.LUNG.sampleMap/LUNG_clinicalMatrix"                                                                         
#> [252] "TCGA.LUNG.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [253] "TCGA.LUNG.sampleMap/SNP6_genomicSegment"                                                                         
#> [254] "TCGA.LUNG.sampleMap/HiSeqV2_exon"                                                                                
#> [255] "TCGA.LUNG.sampleMap/AgilentG4502A_07_3"                                                                          
#> [256] "survival/LUNG_survival.txt"                                                                                      
#> [257] "mc3/LUNG_mc3.txt"                                                                                                
#> [258] "mc3_gene_level/LUNG_mc3_gene_level.txt"                                                                          
#> [259] "RABIT/separate_processed/RABIT_LIHC.HiSeq"                                                                       
#> [260] "RABIT/separate_processed/RABIT_LIHC.HiSeq.V2"                                                                    
#> [261] "TCGA.LIHC.sampleMap/HumanMethylation450"                                                                         
#> [262] "TCGA.LIHC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [263] "TCGA.LIHC.sampleMap/HiSeqV2_percentile"                                                                          
#> [264] "TCGA.LIHC.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [265] "TCGA.LIHC.sampleMap/HiSeqV2"                                                                                     
#> [266] "TCGA.LIHC.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [267] "TCGA.LIHC.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [268] "TCGA.LIHC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [269] "TCGA.LIHC.sampleMap/RPPA"                                                                                        
#> [270] "TCGA.LIHC.sampleMap/LIHC_clinicalMatrix"                                                                         
#> [271] "TCGA.LIHC.sampleMap/SNP6_genomicSegment"                                                                         
#> [272] "TCGA.LIHC.sampleMap/HiSeqV2_exon"                                                                                
#> [273] "merge_merged_reals/LIHC_merge_merged_reals.txt"                                                                  
#> [274] "mc3/LIHC_mc3.txt"                                                                                                
#> [275] "mc3_gene_level/LIHC_mc3_gene_level.txt"                                                                          
#> [276] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LIHC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [277] "survival/LIHC_survival.txt"                                                                                      
#> [278] "RABIT/separate_processed/RABIT_KICH.HiSeq.V2"                                                                    
#> [279] "TCGA.KICH.sampleMap/HumanMethylation450"                                                                         
#> [280] "TCGA.KICH.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [281] "TCGA.KICH.sampleMap/HiSeqV2_percentile"                                                                          
#> [282] "TCGA.KICH.sampleMap/KICH_clinicalMatrix"                                                                         
#> [283] "TCGA.KICH.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [284] "TCGA.KICH.sampleMap/HiSeqV2"                                                                                     
#> [285] "TCGA.KICH.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [286] "TCGA.KICH.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [287] "TCGA.KICH.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [288] "TCGA.KICH.sampleMap/RPPA"                                                                                        
#> [289] "TCGA.KICH.sampleMap/SNP6_genomicSegment"                                                                         
#> [290] "TCGA.KICH.sampleMap/HiSeqV2_exon"                                                                                
#> [291] "merge_merged_reals/KICH_merge_merged_reals.txt"                                                                  
#> [292] "mc3/KICH_mc3.txt"                                                                                                
#> [293] "mc3_gene_level/KICH_mc3_gene_level.txt"                                                                          
#> [294] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/KICH_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [295] "survival/KICH_survival.txt"                                                                                      
#> [296] "RABIT/separate_processed/RABIT_HNSC.HiSeq"                                                                       
#> [297] "RABIT/separate_processed/RABIT_HNSC.HiSeq.V2"                                                                    
#> [298] "TCGA.HNSC.sampleMap/HumanMethylation450"                                                                         
#> [299] "TCGA.HNSC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [300] "TCGA.HNSC.sampleMap/RPPA_RBN"                                                                                    
#> [301] "TCGA.HNSC.sampleMap/HiSeqV2_percentile"                                                                          
#> [302] "TCGA.HNSC.sampleMap/miRNA_GA_gene"                                                                               
#> [303] "TCGA.HNSC.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [304] "TCGA.HNSC.sampleMap/HiSeqV2"                                                                                     
#> [305] "TCGA.HNSC.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [306] "TCGA.HNSC.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [307] "TCGA.HNSC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [308] "TCGA.HNSC.sampleMap/RPPA"                                                                                        
#> [309] "TCGA.HNSC.sampleMap/SNP6_genomicSegment"                                                                         
#> [310] "TCGA.HNSC.sampleMap/HiSeqV2_exon"                                                                                
#> [311] "TCGA.HNSC.sampleMap/HNSC_clinicalMatrix"                                                                         
#> [312] "merge_merged_reals/HNSC_merge_merged_reals.txt"                                                                  
#> [313] "mc3/HNSC_mc3.txt"                                                                                                
#> [314] "mc3_gene_level/HNSC_mc3_gene_level.txt"                                                                          
#> [315] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/HNSC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [316] "survival/HNSC_survival.txt"                                                                                      
#> [317] "TCGA.PCPG.sampleMap/HumanMethylation450"                                                                         
#> [318] "TCGA.PCPG.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [319] "TCGA.PCPG.sampleMap/HiSeqV2_percentile"                                                                          
#> [320] "TCGA.PCPG.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [321] "TCGA.PCPG.sampleMap/HiSeqV2"                                                                                     
#> [322] "TCGA.PCPG.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [323] "TCGA.PCPG.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [324] "TCGA.PCPG.sampleMap/PCPG_clinicalMatrix"                                                                         
#> [325] "TCGA.PCPG.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [326] "TCGA.PCPG.sampleMap/RPPA"                                                                                        
#> [327] "TCGA.PCPG.sampleMap/SNP6_genomicSegment"                                                                         
#> [328] "TCGA.PCPG.sampleMap/HiSeqV2_exon"                                                                                
#> [329] "merge_merged_reals/PCPG_merge_merged_reals.txt"                                                                  
#> [330] "mc3/PCPG_mc3.txt"                                                                                                
#> [331] "mc3_gene_level/PCPG_mc3_gene_level.txt"                                                                          
#> [332] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/PCPG_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [333] "survival/PCPG_survival.txt"                                                                                      
#> [334] "TCGA.ESCA.sampleMap/HumanMethylation450"                                                                         
#> [335] "TCGA.ESCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [336] "TCGA.ESCA.sampleMap/HiSeqV2_percentile"                                                                          
#> [337] "TCGA.ESCA.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [338] "TCGA.ESCA.sampleMap/HiSeqV2"                                                                                     
#> [339] "TCGA.ESCA.sampleMap/HiSeq"                                                                                       
#> [340] "TCGA.ESCA.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [341] "TCGA.ESCA.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [342] "TCGA.ESCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [343] "TCGA.ESCA.sampleMap/HiSeq_exon"                                                                                  
#> [344] "TCGA.ESCA.sampleMap/RPPA"                                                                                        
#> [345] "TCGA.ESCA.sampleMap/SNP6_genomicSegment"                                                                         
#> [346] "TCGA.ESCA.sampleMap/HiSeqV2_exon"                                                                                
#> [347] "TCGA.ESCA.sampleMap/ESCA_clinicalMatrix"                                                                         
#> [348] "merge_merged_reals/ESCA_merge_merged_reals.txt"                                                                  
#> [349] "mc3/ESCA_mc3.txt"                                                                                                
#> [350] "mc3_gene_level/ESCA_mc3_gene_level.txt"                                                                          
#> [351] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/ESCA_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [352] "survival/ESCA_survival.txt"                                                                                      
#> [353] "RABIT/separate_processed/RABIT_THCA.HiSeq.V2"                                                                    
#> [354] "TCGA.THCA.sampleMap/HumanMethylation450"                                                                         
#> [355] "TCGA.THCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [356] "TCGA.THCA.sampleMap/HiSeqV2_percentile"                                                                          
#> [357] "TCGA.THCA.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [358] "TCGA.THCA.sampleMap/HiSeqV2"                                                                                     
#> [359] "TCGA.THCA.sampleMap/mutation_broad_gene"                                                                         
#> [360] "TCGA.THCA.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [361] "TCGA.THCA.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [362] "TCGA.THCA.sampleMap/THCA_clinicalMatrix"                                                                         
#> [363] "TCGA.THCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [364] "TCGA.THCA.sampleMap/RPPA"                                                                                        
#> [365] "TCGA.THCA.sampleMap/SNP6_genomicSegment"                                                                         
#> [366] "TCGA.THCA.sampleMap/HiSeqV2_exon"                                                                                
#> [367] "merge_merged_reals/THCA_merge_merged_reals.txt"                                                                  
#> [368] "mc3/THCA_mc3.txt"                                                                                                
#> [369] "mc3_gene_level/THCA_mc3_gene_level.txt"                                                                          
#> [370] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/THCA_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [371] "survival/THCA_survival.txt"                                                                                      
#> [372] "RABIT/separate_processed/RABIT_LUAD.HiSeq.V2"                                                                    
#> [373] "RABIT/separate_processed/RABIT_LUAD.HiSeq"                                                                       
#> [374] "TCGA.LUAD.sampleMap/HumanMethylation27"                                                                          
#> [375] "TCGA.LUAD.sampleMap/HumanMethylation450"                                                                         
#> [376] "TCGA.LUAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [377] "TCGA.LUAD.sampleMap/RPPA_RBN"                                                                                    
#> [378] "TCGA.LUAD.sampleMap/HiSeqV2_percentile"                                                                          
#> [379] "TCGA.LUAD.sampleMap/miRNA_GA_gene"                                                                               
#> [380] "TCGA.LUAD.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [381] "TCGA.LUAD.sampleMap/HiSeqV2"                                                                                     
#> [382] "TCGA.LUAD.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [383] "TCGA.LUAD.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [384] "TCGA.LUAD.sampleMap/LUAD_clinicalMatrix"                                                                         
#> [385] "TCGA.LUAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [386] "TCGA.LUAD.sampleMap/RPPA"                                                                                        
#> [387] "TCGA.LUAD.sampleMap/SNP6_genomicSegment"                                                                         
#> [388] "TCGA.LUAD.sampleMap/AgilentG4502A_07_3"                                                                          
#> [389] "TCGA.LUAD.sampleMap/HiSeqV2_exon"                                                                                
#> [390] "merge_merged_reals/LUAD_merge_merged_reals.txt"                                                                  
#> [391] "mc3/LUAD_mc3.txt"                                                                                                
#> [392] "mc3_gene_level/LUAD_mc3_gene_level.txt"                                                                          
#> [393] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LUAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [394] "survival/LUAD_survival.txt"                                                                                      
#> [395] "TCGA.LAML.sampleMap/HumanMethylation27"                                                                          
#> [396] "TCGA.LAML.sampleMap/HumanMethylation450"                                                                         
#> [397] "TCGA.LAML.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [398] "TCGA.LAML.sampleMap/GA"                                                                                          
#> [399] "TCGA.LAML.sampleMap/HiSeqV2_percentile"                                                                          
#> [400] "TCGA.LAML.sampleMap/miRNA_GA_gene"                                                                               
#> [401] "TCGA.LAML.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [402] "TCGA.LAML.sampleMap/HiSeqV2"                                                                                     
#> [403] "TCGA.LAML.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [404] "TCGA.LAML.sampleMap/GA_exon"                                                                                     
#> [405] "TCGA.LAML.sampleMap/LAML_clinicalMatrix"                                                                         
#> [406] "TCGA.LAML.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [407] "TCGA.LAML.sampleMap/SNP6_genomicSegment"                                                                         
#> [408] "TCGA.LAML.sampleMap/HiSeqV2_exon"                                                                                
#> [409] "merge_merged_reals/LAML_merge_merged_reals.txt"                                                                  
#> [410] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LAML_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [411] "survival/LAML_survival.txt"                                                                                      
#> [412] "TCGA.LAML.sampleMap/mutation_wustl"                                                                              
#> [413] "TCGA.LAML.sampleMap/mutation_wustl_gene"                                                                         
#> [414] "RABIT/separate_processed/RABIT_BLCA.HiSeq.V2"                                                                    
#> [415] "RABIT/separate_processed/RABIT_BLCA.HiSeq"                                                                       
#> [416] "TCGA.BLCA.sampleMap/HumanMethylation450"                                                                         
#> [417] "TCGA.BLCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [418] "TCGA.BLCA.sampleMap/RPPA_RBN"                                                                                    
#> [419] "TCGA.BLCA.sampleMap/HiSeqV2_percentile"                                                                          
#> [420] "TCGA.BLCA.sampleMap/miRNA_GA_gene"                                                                               
#> [421] "TCGA.BLCA.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [422] "TCGA.BLCA.sampleMap/HiSeqV2"                                                                                     
#> [423] "TCGA.BLCA.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [424] "TCGA.BLCA.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [425] "TCGA.BLCA.sampleMap/BLCA_clinicalMatrix"                                                                         
#> [426] "TCGA.BLCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [427] "TCGA.BLCA.sampleMap/RPPA"                                                                                        
#> [428] "TCGA.BLCA.sampleMap/SNP6_genomicSegment"                                                                         
#> [429] "TCGA.BLCA.sampleMap/HiSeqV2_exon"                                                                                
#> [430] "merge_merged_reals/BLCA_merge_merged_reals.txt"                                                                  
#> [431] "mc3/BLCA_mc3.txt"                                                                                                
#> [432] "mc3_gene_level/BLCA_mc3_gene_level.txt"                                                                          
#> [433] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/BLCA_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [434] "survival/BLCA_survival.txt"                                                                                      
#> [435] "TCGA.SKCM.sampleMap/HumanMethylation450"                                                                         
#> [436] "TCGA.SKCM.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [437] "TCGA.SKCM.sampleMap/HiSeqV2_percentile"                                                                          
#> [438] "TCGA.SKCM.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [439] "TCGA.SKCM.sampleMap/HiSeqV2"                                                                                     
#> [440] "TCGA.SKCM.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [441] "TCGA.SKCM.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [442] "TCGA.SKCM.sampleMap/SKCM_clinicalMatrix"                                                                         
#> [443] "TCGA.SKCM.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [444] "TCGA.SKCM.sampleMap/RPPA"                                                                                        
#> [445] "TCGA.SKCM.sampleMap/SNP6_genomicSegment"                                                                         
#> [446] "TCGA.SKCM.sampleMap/HiSeqV2_exon"                                                                                
#> [447] "merge_merged_reals/SKCM_merge_merged_reals.txt"                                                                  
#> [448] "mc3/SKCM_mc3.txt"                                                                                                
#> [449] "mc3_gene_level/SKCM_mc3_gene_level.txt"                                                                          
#> [450] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/SKCM_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [451] "survival/SKCM_survival.txt"                                                                                      
#> [452] "TCGA.LUSC.sampleMap/HumanMethylation27"                                                                          
#> [453] "TCGA.LUSC.sampleMap/HumanMethylation450"                                                                         
#> [454] "TCGA.LUSC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [455] "TCGA.LUSC.sampleMap/RPPA_RBN"                                                                                    
#> [456] "TCGA.LUSC.sampleMap/HT_HG-U133A"                                                                                 
#> [457] "TCGA.LUSC.sampleMap/HiSeqV2_percentile"                                                                          
#> [458] "TCGA.LUSC.sampleMap/miRNA_GA_gene"                                                                               
#> [459] "TCGA.LUSC.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [460] "TCGA.LUSC.sampleMap/HiSeqV2"                                                                                     
#> [461] "TCGA.LUSC.sampleMap/LUSC_clinicalMatrix"                                                                         
#> [462] "TCGA.LUSC.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [463] "TCGA.LUSC.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [464] "TCGA.LUSC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [465] "TCGA.LUSC.sampleMap/RPPA"                                                                                        
#> [466] "TCGA.LUSC.sampleMap/SNP6_genomicSegment"                                                                         
#> [467] "TCGA.LUSC.sampleMap/HiSeqV2_exon"                                                                                
#> [468] "TCGA.LUSC.sampleMap/AgilentG4502A_07_3"                                                                          
#> [469] "RABIT/separate_processed/RABIT_LUSC.HiSeq"                                                                       
#> [470] "RABIT/separate_processed/RABIT_LUSC.HiSeq.V2"                                                                    
#> [471] "merge_merged_reals/LUSC_merge_merged_reals.txt"                                                                  
#> [472] "mc3/LUSC_mc3.txt"                                                                                                
#> [473] "mc3_gene_level/LUSC_mc3_gene_level.txt"                                                                          
#> [474] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LUSC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [475] "survival/LUSC_survival.txt"                                                                                      
#> [476] "TCGA.TGCT.sampleMap/HumanMethylation450"                                                                         
#> [477] "TCGA.TGCT.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [478] "TCGA.TGCT.sampleMap/HiSeqV2_percentile"                                                                          
#> [479] "TCGA.TGCT.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [480] "TCGA.TGCT.sampleMap/HiSeqV2"                                                                                     
#> [481] "TCGA.TGCT.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [482] "TCGA.TGCT.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [483] "TCGA.TGCT.sampleMap/TGCT_clinicalMatrix"                                                                         
#> [484] "TCGA.TGCT.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [485] "TCGA.TGCT.sampleMap/RPPA"                                                                                        
#> [486] "TCGA.TGCT.sampleMap/SNP6_genomicSegment"                                                                         
#> [487] "TCGA.TGCT.sampleMap/HiSeqV2_exon"                                                                                
#> [488] "merge_merged_reals/TGCT_merge_merged_reals.txt"                                                                  
#> [489] "mc3/TGCT_mc3.txt"                                                                                                
#> [490] "mc3_gene_level/TGCT_mc3_gene_level.txt"                                                                          
#> [491] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/TGCT_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [492] "survival/TGCT_survival.txt"                                                                                      
#> [493] "TCGA.PAAD.sampleMap/HumanMethylation450"                                                                         
#> [494] "TCGA.PAAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [495] "TCGA.PAAD.sampleMap/HiSeqV2_percentile"                                                                          
#> [496] "TCGA.PAAD.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [497] "TCGA.PAAD.sampleMap/HiSeqV2"                                                                                     
#> [498] "TCGA.PAAD.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [499] "TCGA.PAAD.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [500] "TCGA.PAAD.sampleMap/PAAD_clinicalMatrix"                                                                         
#> [501] "TCGA.PAAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [502] "TCGA.PAAD.sampleMap/RPPA"                                                                                        
#> [503] "TCGA.PAAD.sampleMap/SNP6_genomicSegment"                                                                         
#> [504] "TCGA.PAAD.sampleMap/HiSeqV2_exon"                                                                                
#> [505] "merge_merged_reals/PAAD_merge_merged_reals.txt"                                                                  
#> [506] "mc3/PAAD_mc3.txt"                                                                                                
#> [507] "mc3_gene_level/PAAD_mc3_gene_level.txt"                                                                          
#> [508] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/PAAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [509] "survival/PAAD_survival.txt"                                                                                      
#> [510] "RABIT/separate_processed/RABIT_GBM.U133A"                                                                        
#> [511] "RABIT/separate_processed/RABIT_GBM.Agilent"                                                                      
#> [512] "RABIT/separate_processed/RABIT_GBM.HiSeq.V2"                                                                     
#> [513] "TCGA.GBM.sampleMap/HumanMethylation27"                                                                           
#> [514] "TCGA.GBM.sampleMap/HumanMethylation450"                                                                          
#> [515] "TCGA.GBM.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                 
#> [516] "TCGA.GBM.sampleMap/RPPA_RBN"                                                                                     
#> [517] "TCGA.GBM.sampleMap/HT_HG-U133A"                                                                                  
#> [518] "TCGA.GBM.sampleMap/HiSeqV2_percentile"                                                                           
#> [519] "TCGA.GBM.sampleMap/HiSeqV2_PANCAN"                                                                               
#> [520] "TCGA.GBM.sampleMap/HiSeqV2"                                                                                      
#> [521] "TCGA.GBM.sampleMap/SNP6_nocnv_genomicSegment"                                                                    
#> [522] "TCGA.GBM.sampleMap/miRNA_HiSeq_gene"                                                                             
#> [523] "TCGA.GBM.sampleMap/AgilentG4502A_07_2"                                                                           
#> [524] "TCGA.GBM.sampleMap/GBM_clinicalMatrix"                                                                           
#> [525] "TCGA.GBM.sampleMap/AgilentG4502A_07_1"                                                                           
#> [526] "TCGA.GBM.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                          
#> [527] "TCGA.GBM.sampleMap/RPPA"                                                                                         
#> [528] "TCGA.GBM.sampleMap/SNP6_genomicSegment"                                                                          
#> [529] "TCGA.GBM.sampleMap/HiSeqV2_exon"                                                                                 
#> [530] "merge_merged_reals/GBM_merge_merged_reals.txt"                                                                   
#> [531] "mc3/GBM_mc3.txt"                                                                                                 
#> [532] "mc3_gene_level/GBM_mc3_gene_level.txt"                                                                           
#> [533] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/GBM_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt" 
#> [534] "survival/GBM_survival.txt"                                                                                       
#> [535] "RABIT/separate_processed/RABIT_STAD.HiSeq"                                                                       
#> [536] "TCGA.STAD.sampleMap/HumanMethylation27"                                                                          
#> [537] "TCGA.STAD.sampleMap/HumanMethylation450"                                                                         
#> [538] "TCGA.STAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [539] "TCGA.STAD.sampleMap/GA"                                                                                          
#> [540] "TCGA.STAD.sampleMap/HiSeqV2_percentile"                                                                          
#> [541] "TCGA.STAD.sampleMap/miRNA_GA_gene"                                                                               
#> [542] "TCGA.STAD.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [543] "TCGA.STAD.sampleMap/HiSeqV2"                                                                                     
#> [544] "TCGA.STAD.sampleMap/HiSeq"                                                                                       
#> [545] "TCGA.STAD.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [546] "TCGA.STAD.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [547] "TCGA.STAD.sampleMap/GA_exon"                                                                                     
#> [548] "TCGA.STAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [549] "TCGA.STAD.sampleMap/HiSeq_exon"                                                                                  
#> [550] "TCGA.STAD.sampleMap/RPPA"                                                                                        
#> [551] "TCGA.STAD.sampleMap/SNP6_genomicSegment"                                                                         
#> [552] "TCGA.STAD.sampleMap/HiSeqV2_exon"                                                                                
#> [553] "TCGA.STAD.sampleMap/STAD_clinicalMatrix"                                                                         
#> [554] "merge_merged_reals/STAD_merge_merged_reals.txt"                                                                  
#> [555] "mc3/STAD_mc3.txt"                                                                                                
#> [556] "mc3_gene_level/STAD_mc3_gene_level.txt"                                                                          
#> [557] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/STAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [558] "survival/STAD_survival.txt"                                                                                      
#> [559] "TCGA.MESO.sampleMap/HumanMethylation450"                                                                         
#> [560] "TCGA.MESO.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [561] "TCGA.MESO.sampleMap/HiSeqV2_percentile"                                                                          
#> [562] "TCGA.MESO.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [563] "TCGA.MESO.sampleMap/HiSeqV2"                                                                                     
#> [564] "TCGA.MESO.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [565] "TCGA.MESO.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [566] "TCGA.MESO.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [567] "TCGA.MESO.sampleMap/RPPA"                                                                                        
#> [568] "TCGA.MESO.sampleMap/SNP6_genomicSegment"                                                                         
#> [569] "TCGA.MESO.sampleMap/HiSeqV2_exon"                                                                                
#> [570] "TCGA.MESO.sampleMap/MESO_clinicalMatrix"                                                                         
#> [571] "merge_merged_reals/MESO_merge_merged_reals.txt"                                                                  
#> [572] "mc3/MESO_mc3.txt"                                                                                                
#> [573] "mc3_gene_level/MESO_mc3_gene_level.txt"                                                                          
#> [574] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/MESO_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [575] "survival/MESO_survival.txt"                                                                                      
#> [576] "TCGA.UVM.sampleMap/HumanMethylation450"                                                                          
#> [577] "TCGA.UVM.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                 
#> [578] "TCGA.UVM.sampleMap/HiSeqV2_percentile"                                                                           
#> [579] "TCGA.UVM.sampleMap/HiSeqV2_PANCAN"                                                                               
#> [580] "TCGA.UVM.sampleMap/HiSeqV2"                                                                                      
#> [581] "TCGA.UVM.sampleMap/SNP6_nocnv_genomicSegment"                                                                    
#> [582] "TCGA.UVM.sampleMap/miRNA_HiSeq_gene"                                                                             
#> [583] "TCGA.UVM.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                          
#> [584] "TCGA.UVM.sampleMap/RPPA"                                                                                         
#> [585] "TCGA.UVM.sampleMap/SNP6_genomicSegment"                                                                          
#> [586] "TCGA.UVM.sampleMap/UVM_clinicalMatrix"                                                                           
#> [587] "TCGA.UVM.sampleMap/HiSeqV2_exon"                                                                                 
#> [588] "merge_merged_reals/UVM_merge_merged_reals.txt"                                                                   
#> [589] "mc3/UVM_mc3.txt"                                                                                                 
#> [590] "mc3_gene_level/UVM_mc3_gene_level.txt"                                                                           
#> [591] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/UVM_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt" 
#> [592] "survival/UVM_survival.txt"                                                                                       
#> [593] "TCGA.GBMLGG.sampleMap/HumanMethylation450"                                                                       
#> [594] "TCGA.GBMLGG.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                              
#> [595] "TCGA.GBMLGG.sampleMap/HiSeqV2_PANCAN"                                                                            
#> [596] "TCGA.GBMLGG.sampleMap/HiSeqV2"                                                                                   
#> [597] "TCGA.GBMLGG.sampleMap/SNP6_nocnv_genomicSegment"                                                                 
#> [598] "TCGA.GBMLGG.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                       
#> [599] "TCGA.GBMLGG.sampleMap/GBMLGG_clinicalMatrix"                                                                     
#> [600] "TCGA.GBMLGG.sampleMap/SNP6_genomicSegment"                                                                       
#> [601] "TCGA.GBMLGG.sampleMap/HiSeqV2_exon"                                                                              
#> [602] "survival/GBMLGG_survival.txt"                                                                                    
#> [603] "mc3/GBMLGG_mc3.txt"                                                                                              
#> [604] "mc3_gene_level/GBMLGG_mc3_gene_level.txt"                                                                        
#> [605] "TCGA.THYM.sampleMap/HumanMethylation450"                                                                         
#> [606] "TCGA.THYM.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [607] "TCGA.THYM.sampleMap/HiSeqV2_percentile"                                                                          
#> [608] "TCGA.THYM.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [609] "TCGA.THYM.sampleMap/HiSeqV2"                                                                                     
#> [610] "TCGA.THYM.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [611] "TCGA.THYM.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [612] "TCGA.THYM.sampleMap/THYM_clinicalMatrix"                                                                         
#> [613] "TCGA.THYM.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [614] "TCGA.THYM.sampleMap/RPPA"                                                                                        
#> [615] "TCGA.THYM.sampleMap/SNP6_genomicSegment"                                                                         
#> [616] "TCGA.THYM.sampleMap/HiSeqV2_exon"                                                                                
#> [617] "merge_merged_reals/THYM_merge_merged_reals.txt"                                                                  
#> [618] "mc3/THYM_mc3.txt"                                                                                                
#> [619] "mc3_gene_level/THYM_mc3_gene_level.txt"                                                                          
#> [620] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/THYM_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [621] "survival/THYM_survival.txt"                                                                                      
#> [622] "RABIT/separate_processed/RABIT_UCEC.GA.V2"                                                                       
#> [623] "RABIT/separate_processed/RABIT_UCEC.GA"                                                                          
#> [624] "RABIT/separate_processed/RABIT_UCEC.HiSeq.V2"                                                                    
#> [625] "TCGA.UCEC.sampleMap/HumanMethylation27"                                                                          
#> [626] "TCGA.UCEC.sampleMap/GAV2"                                                                                        
#> [627] "TCGA.UCEC.sampleMap/HumanMethylation450"                                                                         
#> [628] "TCGA.UCEC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [629] "TCGA.UCEC.sampleMap/RPPA_RBN"                                                                                    
#> [630] "TCGA.UCEC.sampleMap/HiSeqV2_percentile"                                                                          
#> [631] "TCGA.UCEC.sampleMap/miRNA_GA_gene"                                                                               
#> [632] "TCGA.UCEC.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [633] "TCGA.UCEC.sampleMap/HiSeqV2"                                                                                     
#> [634] "TCGA.UCEC.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [635] "TCGA.UCEC.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [636] "TCGA.UCEC.sampleMap/GAV2_exon"                                                                                   
#> [637] "TCGA.UCEC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [638] "TCGA.UCEC.sampleMap/RPPA"                                                                                        
#> [639] "TCGA.UCEC.sampleMap/UCEC_clinicalMatrix"                                                                         
#> [640] "TCGA.UCEC.sampleMap/SNP6_genomicSegment"                                                                         
#> [641] "TCGA.UCEC.sampleMap/HiSeqV2_exon"                                                                                
#> [642] "TCGA.UCEC.sampleMap/AgilentG4502A_07_3"                                                                          
#> [643] "merge_merged_reals/UCEC_merge_merged_reals.txt"                                                                  
#> [644] "mc3/UCEC_mc3.txt"                                                                                                
#> [645] "mc3_gene_level/UCEC_mc3_gene_level.txt"                                                                          
#> [646] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/UCEC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [647] "survival/UCEC_survival.txt"                                                                                      
#> [648] "RABIT/separate_processed/RABIT_BRCA.HiSeq"                                                                       
#> [649] "RABIT/separate_processed/RABIT_BRCA.Agilent"                                                                     
#> [650] "RABIT/separate_processed/RABIT_BRCA.HiSeq.V2"                                                                    
#> [651] "TCGA.BRCA.sampleMap/HumanMethylation27"                                                                          
#> [652] "TCGA.BRCA.sampleMap/HumanMethylation450"                                                                         
#> [653] "TCGA.BRCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [654] "TCGA.BRCA.sampleMap/RPPA_RBN"                                                                                    
#> [655] "TCGA.BRCA.sampleMap/HiSeqV2_percentile"                                                                          
#> [656] "TCGA.BRCA.sampleMap/miRNA_GA_gene"                                                                               
#> [657] "TCGA.BRCA.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [658] "TCGA.BRCA.sampleMap/HiSeqV2"                                                                                     
#> [659] "TCGA.BRCA.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [660] "TCGA.BRCA.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [661] "TCGA.BRCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [662] "TCGA.BRCA.sampleMap/RPPA"                                                                                        
#> [663] "TCGA.BRCA.sampleMap/SNP6_genomicSegment"                                                                         
#> [664] "TCGA.BRCA.sampleMap/BRCA_clinicalMatrix"                                                                         
#> [665] "TCGA.BRCA.sampleMap/HiSeqV2_exon"                                                                                
#> [666] "TCGA.BRCA.sampleMap/AgilentG4502A_07_3"                                                                          
#> [667] "merge_merged_reals/BRCA_merge_merged_reals.txt"                                                                  
#> [668] "mc3/BRCA_mc3.txt"                                                                                                
#> [669] "mc3_gene_level/BRCA_mc3_gene_level.txt"                                                                          
#> [670] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/BRCA_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [671] "survival/BRCA_survival.txt"                                                                                      
#> [672] "TCGA.UCS.sampleMap/HumanMethylation450"                                                                          
#> [673] "TCGA.UCS.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                 
#> [674] "TCGA.UCS.sampleMap/HiSeqV2_percentile"                                                                           
#> [675] "TCGA.UCS.sampleMap/HiSeqV2_PANCAN"                                                                               
#> [676] "TCGA.UCS.sampleMap/HiSeqV2"                                                                                      
#> [677] "TCGA.UCS.sampleMap/SNP6_nocnv_genomicSegment"                                                                    
#> [678] "TCGA.UCS.sampleMap/miRNA_HiSeq_gene"                                                                             
#> [679] "TCGA.UCS.sampleMap/UCS_clinicalMatrix"                                                                           
#> [680] "TCGA.UCS.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                          
#> [681] "TCGA.UCS.sampleMap/RPPA"                                                                                         
#> [682] "TCGA.UCS.sampleMap/SNP6_genomicSegment"                                                                          
#> [683] "TCGA.UCS.sampleMap/HiSeqV2_exon"                                                                                 
#> [684] "merge_merged_reals/UCS_merge_merged_reals.txt"                                                                   
#> [685] "mc3/UCS_mc3.txt"                                                                                                 
#> [686] "mc3_gene_level/UCS_mc3_gene_level.txt"                                                                           
#> [687] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/UCS_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt" 
#> [688] "survival/UCS_survival.txt"                                                                                       
#> [689] "TCGA.COAD.sampleMap/HumanMethylation27"                                                                          
#> [690] "TCGA.COAD.sampleMap/GAV2"                                                                                        
#> [691] "TCGA.COAD.sampleMap/HumanMethylation450"                                                                         
#> [692] "TCGA.COAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"                                                
#> [693] "TCGA.COAD.sampleMap/RPPA_RBN"                                                                                    
#> [694] "TCGA.COAD.sampleMap/HiSeqV2_percentile"                                                                          
#> [695] "TCGA.COAD.sampleMap/miRNA_GA_gene"                                                                               
#> [696] "TCGA.COAD.sampleMap/HiSeqV2_PANCAN"                                                                              
#> [697] "TCGA.COAD.sampleMap/HiSeqV2"                                                                                     
#> [698] "TCGA.COAD.sampleMap/COAD_clinicalMatrix"                                                                         
#> [699] "TCGA.COAD.sampleMap/SNP6_nocnv_genomicSegment"                                                                   
#> [700] "TCGA.COAD.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [701] "TCGA.COAD.sampleMap/GAV2_exon"                                                                                   
#> [702] "TCGA.COAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"                                         
#> [703] "TCGA.COAD.sampleMap/RPPA"                                                                                        
#> [704] "TCGA.COAD.sampleMap/SNP6_genomicSegment"                                                                         
#> [705] "TCGA.COAD.sampleMap/HiSeqV2_exon"                                                                                
#> [706] "TCGA.COAD.sampleMap/AgilentG4502A_07_3"                                                                          
#> [707] "RABIT/separate_processed/RABIT_COAD.Agilent"                                                                     
#> [708] "RABIT/separate_processed/RABIT_COAD.HiSeq.V2"                                                                    
#> [709] "merge_merged_reals/COAD_merge_merged_reals.txt"                                                                  
#> [710] "mc3/COAD_mc3.txt"                                                                                                
#> [711] "mc3_gene_level/COAD_mc3_gene_level.txt"                                                                          
#> [712] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/COAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [713] "survival/COAD_survival.txt"                                                                                      
#> [714] "TCGA.FPPP.sampleMap/miRNA_HiSeq_gene"                                                                            
#> [715] "TCGA.FPPP.sampleMap/FPPP_clinicalMatrix"