Get datasets of XenaHub object
Arguments
- x
a XenaHub object
Examples
xe = XenaGenerate(subset = XenaHostNames == "tcgaHub"); datasets(xe)
#> [1] "TCGA.OV.sampleMap/HumanMethylation27"
#> [2] "TCGA.OV.sampleMap/HumanMethylation450"
#> [3] "TCGA.OV.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [4] "TCGA.OV.sampleMap/OV_clinicalMatrix"
#> [5] "TCGA.OV.sampleMap/RPPA_RBN"
#> [6] "TCGA.OV.sampleMap/HT_HG-U133A"
#> [7] "TCGA.OV.sampleMap/HiSeqV2_percentile"
#> [8] "TCGA.OV.sampleMap/HiSeqV2_PANCAN"
#> [9] "TCGA.OV.sampleMap/HiSeqV2"
#> [10] "TCGA.OV.sampleMap/HiSeq"
#> [11] "TCGA.OV.sampleMap/SNP6_nocnv_genomicSegment"
#> [12] "TCGA.OV.sampleMap/miRNA_HiSeq_gene"
#> [13] "TCGA.OV.sampleMap/AgilentG4502A_07_2"
#> [14] "TCGA.OV.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [15] "TCGA.OV.sampleMap/HiSeq_exon"
#> [16] "TCGA.OV.sampleMap/RPPA"
#> [17] "TCGA.OV.sampleMap/SNP6_genomicSegment"
#> [18] "TCGA.OV.sampleMap/TCGA_OV_gene_expression_subtype"
#> [19] "TCGA.OV.sampleMap/HiSeqV2_exon"
#> [20] "TCGA.OV.sampleMap/AgilentG4502A_07_3"
#> [21] "RABIT/separate_processed/RABIT_OV.Agilent"
#> [22] "RABIT/separate_processed/RABIT_OV.U133A"
#> [23] "merge_merged_reals/OV_merge_merged_reals.txt"
#> [24] "mc3/OV_mc3.txt"
#> [25] "mc3_gene_level/OV_mc3_gene_level.txt"
#> [26] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/OV_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [27] "survival/OV_survival.txt"
#> [28] "TCGA.KIRC.sampleMap/HumanMethylation27"
#> [29] "TCGA.KIRC.sampleMap/HumanMethylation450"
#> [30] "TCGA.KIRC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [31] "TCGA.KIRC.sampleMap/RPPA_RBN"
#> [32] "TCGA.KIRC.sampleMap/HiSeqV2_percentile"
#> [33] "TCGA.KIRC.sampleMap/KIRC_clinicalMatrix"
#> [34] "TCGA.KIRC.sampleMap/miRNA_GA_gene"
#> [35] "TCGA.KIRC.sampleMap/HiSeqV2_PANCAN"
#> [36] "TCGA.KIRC.sampleMap/HiSeqV2"
#> [37] "TCGA.KIRC.sampleMap/SNP6_nocnv_genomicSegment"
#> [38] "TCGA.KIRC.sampleMap/miRNA_HiSeq_gene"
#> [39] "TCGA.KIRC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [40] "TCGA.KIRC.sampleMap/RPPA"
#> [41] "TCGA.KIRC.sampleMap/SNP6_genomicSegment"
#> [42] "TCGA.KIRC.sampleMap/HiSeqV2_exon"
#> [43] "TCGA.KIRC.sampleMap/AgilentG4502A_07_3"
#> [44] "RABIT/separate_processed/RABIT_KIRC.HiSeq.V2"
#> [45] "RABIT/separate_processed/RABIT_KIRC.HiSeq"
#> [46] "merge_merged_reals/KIRC_merge_merged_reals.txt"
#> [47] "mc3/KIRC_mc3.txt"
#> [48] "mc3_gene_level/KIRC_mc3_gene_level.txt"
#> [49] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/KIRC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [50] "survival/KIRC_survival.txt"
#> [51] "TCGA.LGG.sampleMap/HumanMethylation450"
#> [52] "TCGA.LGG.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [53] "TCGA.LGG.sampleMap/oneoff_TCGA_LGG_MethylMix"
#> [54] "TCGA.LGG.sampleMap/HiSeqV2_percentile"
#> [55] "TCGA.LGG.sampleMap/HiSeqV2_PANCAN"
#> [56] "TCGA.LGG.sampleMap/HiSeqV2"
#> [57] "TCGA.LGG.sampleMap/SNP6_nocnv_genomicSegment"
#> [58] "TCGA.LGG.sampleMap/miRNA_HiSeq_gene"
#> [59] "TCGA.LGG.sampleMap/LGG_clinicalMatrix"
#> [60] "TCGA.LGG.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [61] "TCGA.LGG.sampleMap/RPPA"
#> [62] "TCGA.LGG.sampleMap/SNP6_genomicSegment"
#> [63] "TCGA.LGG.sampleMap/HiSeqV2_exon"
#> [64] "TCGA.LGG.sampleMap/AgilentG4502A_07_3"
#> [65] "merge_merged_reals/LGG_merge_merged_reals.txt"
#> [66] "mc3/LGG_mc3.txt"
#> [67] "mc3_gene_level/LGG_mc3_gene_level.txt"
#> [68] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LGG_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [69] "survival/LGG_survival.txt"
#> [70] "RABIT/separate_processed/RABIT_KIRP.HiSeq.V2"
#> [71] "TCGA.KIRP.sampleMap/HumanMethylation27"
#> [72] "TCGA.KIRP.sampleMap/HumanMethylation450"
#> [73] "TCGA.KIRP.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [74] "TCGA.KIRP.sampleMap/HiSeqV2_percentile"
#> [75] "TCGA.KIRP.sampleMap/miRNA_GA_gene"
#> [76] "TCGA.KIRP.sampleMap/HiSeqV2_PANCAN"
#> [77] "TCGA.KIRP.sampleMap/HiSeqV2"
#> [78] "TCGA.KIRP.sampleMap/SNP6_nocnv_genomicSegment"
#> [79] "TCGA.KIRP.sampleMap/miRNA_HiSeq_gene"
#> [80] "TCGA.KIRP.sampleMap/KIRP_clinicalMatrix"
#> [81] "TCGA.KIRP.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [82] "TCGA.KIRP.sampleMap/RPPA"
#> [83] "TCGA.KIRP.sampleMap/SNP6_genomicSegment"
#> [84] "TCGA.KIRP.sampleMap/HiSeqV2_exon"
#> [85] "TCGA.KIRP.sampleMap/AgilentG4502A_07_3"
#> [86] "merge_merged_reals/KIRP_merge_merged_reals.txt"
#> [87] "mc3/KIRP_mc3.txt"
#> [88] "mc3_gene_level/KIRP_mc3_gene_level.txt"
#> [89] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/KIRP_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [90] "survival/KIRP_survival.txt"
#> [91] "TCGA.PANCAN.sampleMap/HumanMethylation27"
#> [92] "TCGA.PANCAN.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [93] "TCGA.PANCAN.sampleMap/miRNA_GA_gene"
#> [94] "TCGA.PANCAN.sampleMap/miRNA_HiSeq_gene"
#> [95] "TCGA.PANCAN.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [96] "TCGA.PANCAN.sampleMap/SNP6_genomicSegment"
#> [97] "TCGA.PANCAN.sampleMap/HiSeqV2_exon"
#> [98] "RABIT/pancan/RABIT_pancan.HiSeq.V2"
#> [99] "RABIT/pancan/RABIT_pancan.HiSeq"
#> [100] "TCGA.CHOL.sampleMap/HumanMethylation450"
#> [101] "TCGA.CHOL.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [102] "TCGA.CHOL.sampleMap/HiSeqV2_percentile"
#> [103] "TCGA.CHOL.sampleMap/HiSeqV2_PANCAN"
#> [104] "TCGA.CHOL.sampleMap/HiSeqV2"
#> [105] "TCGA.CHOL.sampleMap/SNP6_nocnv_genomicSegment"
#> [106] "TCGA.CHOL.sampleMap/miRNA_HiSeq_gene"
#> [107] "TCGA.CHOL.sampleMap/CHOL_clinicalMatrix"
#> [108] "TCGA.CHOL.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [109] "TCGA.CHOL.sampleMap/RPPA"
#> [110] "TCGA.CHOL.sampleMap/SNP6_genomicSegment"
#> [111] "TCGA.CHOL.sampleMap/HiSeqV2_exon"
#> [112] "merge_merged_reals/CHOL_merge_merged_reals.txt"
#> [113] "mc3/CHOL_mc3.txt"
#> [114] "mc3_gene_level/CHOL_mc3_gene_level.txt"
#> [115] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/CHOL_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [116] "survival/CHOL_survival.txt"
#> [117] "TCGA.COADREAD.sampleMap/HumanMethylation27"
#> [118] "TCGA.COADREAD.sampleMap/HumanMethylation450"
#> [119] "TCGA.COADREAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [120] "TCGA.COADREAD.sampleMap/RPPA_RBN"
#> [121] "TCGA.COADREAD.sampleMap/HiSeqV2_PANCAN"
#> [122] "TCGA.COADREAD.sampleMap/HiSeqV2"
#> [123] "TCGA.COADREAD.sampleMap/COADREAD_clinicalMatrix"
#> [124] "TCGA.COADREAD.sampleMap/SNP6_nocnv_genomicSegment"
#> [125] "TCGA.COADREAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [126] "TCGA.COADREAD.sampleMap/SNP6_genomicSegment"
#> [127] "TCGA.COADREAD.sampleMap/HiSeqV2_exon"
#> [128] "TCGA.COADREAD.sampleMap/AgilentG4502A_07_3"
#> [129] "survival/COADREAD_survival.txt"
#> [130] "mc3/COADREAD_mc3.txt"
#> [131] "mc3_gene_level/COADREAD_mc3_gene_level.txt"
#> [132] "TCGA.ACC.sampleMap/HumanMethylation450"
#> [133] "TCGA.ACC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [134] "TCGA.ACC.sampleMap/HiSeqV2_percentile"
#> [135] "TCGA.ACC.sampleMap/HiSeqV2_PANCAN"
#> [136] "TCGA.ACC.sampleMap/HiSeqV2"
#> [137] "TCGA.ACC.sampleMap/ACC_clinicalMatrix"
#> [138] "TCGA.ACC.sampleMap/SNP6_nocnv_genomicSegment"
#> [139] "TCGA.ACC.sampleMap/miRNA_HiSeq_gene"
#> [140] "TCGA.ACC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [141] "TCGA.ACC.sampleMap/RPPA"
#> [142] "TCGA.ACC.sampleMap/SNP6_genomicSegment"
#> [143] "TCGA.ACC.sampleMap/HiSeqV2_exon"
#> [144] "merge_merged_reals/ACC_merge_merged_reals.txt"
#> [145] "mc3/ACC_mc3.txt"
#> [146] "mc3_gene_level/ACC_mc3_gene_level.txt"
#> [147] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/ACC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [148] "survival/ACC_survival.txt"
#> [149] "RABIT/separate_processed/RABIT_CESC.HiSeq.V2"
#> [150] "TCGA.CESC.sampleMap/HumanMethylation450"
#> [151] "TCGA.CESC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [152] "TCGA.CESC.sampleMap/HiSeqV2_percentile"
#> [153] "TCGA.CESC.sampleMap/HiSeqV2_PANCAN"
#> [154] "TCGA.CESC.sampleMap/HiSeqV2"
#> [155] "TCGA.CESC.sampleMap/SNP6_nocnv_genomicSegment"
#> [156] "TCGA.CESC.sampleMap/miRNA_HiSeq_gene"
#> [157] "TCGA.CESC.sampleMap/CESC_clinicalMatrix"
#> [158] "TCGA.CESC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [159] "TCGA.CESC.sampleMap/RPPA"
#> [160] "TCGA.CESC.sampleMap/SNP6_genomicSegment"
#> [161] "TCGA.CESC.sampleMap/HiSeqV2_exon"
#> [162] "merge_merged_reals/CESC_merge_merged_reals.txt"
#> [163] "mc3/CESC_mc3.txt"
#> [164] "mc3_gene_level/CESC_mc3_gene_level.txt"
#> [165] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/CESC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [166] "survival/CESC_survival.txt"
#> [167] "RABIT/separate_processed/RABIT_READ.HiSeq.V2"
#> [168] "RABIT/separate_processed/RABIT_READ.Agilent"
#> [169] "TCGA.READ.sampleMap/HumanMethylation27"
#> [170] "TCGA.READ.sampleMap/GAV2"
#> [171] "TCGA.READ.sampleMap/HumanMethylation450"
#> [172] "TCGA.READ.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [173] "TCGA.READ.sampleMap/RPPA_RBN"
#> [174] "TCGA.READ.sampleMap/HiSeqV2_percentile"
#> [175] "TCGA.READ.sampleMap/miRNA_GA_gene"
#> [176] "TCGA.READ.sampleMap/HiSeqV2_PANCAN"
#> [177] "TCGA.READ.sampleMap/HiSeqV2"
#> [178] "TCGA.READ.sampleMap/SNP6_nocnv_genomicSegment"
#> [179] "TCGA.READ.sampleMap/miRNA_HiSeq_gene"
#> [180] "TCGA.READ.sampleMap/GAV2_exon"
#> [181] "TCGA.READ.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [182] "TCGA.READ.sampleMap/RPPA"
#> [183] "TCGA.READ.sampleMap/SNP6_genomicSegment"
#> [184] "TCGA.READ.sampleMap/HiSeqV2_exon"
#> [185] "TCGA.READ.sampleMap/READ_clinicalMatrix"
#> [186] "TCGA.READ.sampleMap/AgilentG4502A_07_3"
#> [187] "merge_merged_reals/READ_merge_merged_reals.txt"
#> [188] "mc3/READ_mc3.txt"
#> [189] "mc3_gene_level/READ_mc3_gene_level.txt"
#> [190] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/READ_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [191] "survival/READ_survival.txt"
#> [192] "TCGA.SARC.sampleMap/HumanMethylation450"
#> [193] "TCGA.SARC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [194] "TCGA.SARC.sampleMap/SARC_clinicalMatrix"
#> [195] "TCGA.SARC.sampleMap/HiSeqV2_percentile"
#> [196] "TCGA.SARC.sampleMap/HiSeqV2_PANCAN"
#> [197] "TCGA.SARC.sampleMap/HiSeqV2"
#> [198] "TCGA.SARC.sampleMap/SNP6_nocnv_genomicSegment"
#> [199] "TCGA.SARC.sampleMap/miRNA_HiSeq_gene"
#> [200] "TCGA.SARC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [201] "TCGA.SARC.sampleMap/RPPA"
#> [202] "TCGA.SARC.sampleMap/SNP6_genomicSegment"
#> [203] "TCGA.SARC.sampleMap/HiSeqV2_exon"
#> [204] "merge_merged_reals/SARC_merge_merged_reals.txt"
#> [205] "mc3/SARC_mc3.txt"
#> [206] "mc3_gene_level/SARC_mc3_gene_level.txt"
#> [207] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/SARC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [208] "survival/SARC_survival.txt"
#> [209] "TCGA.DLBC.sampleMap/HumanMethylation450"
#> [210] "TCGA.DLBC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [211] "TCGA.DLBC.sampleMap/DLBC_clinicalMatrix"
#> [212] "TCGA.DLBC.sampleMap/HiSeqV2_percentile"
#> [213] "TCGA.DLBC.sampleMap/HiSeqV2_PANCAN"
#> [214] "TCGA.DLBC.sampleMap/HiSeqV2"
#> [215] "TCGA.DLBC.sampleMap/SNP6_nocnv_genomicSegment"
#> [216] "TCGA.DLBC.sampleMap/miRNA_HiSeq_gene"
#> [217] "TCGA.DLBC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [218] "TCGA.DLBC.sampleMap/RPPA"
#> [219] "TCGA.DLBC.sampleMap/SNP6_genomicSegment"
#> [220] "TCGA.DLBC.sampleMap/HiSeqV2_exon"
#> [221] "merge_merged_reals/DLBC_merge_merged_reals.txt"
#> [222] "mc3/DLBC_mc3.txt"
#> [223] "mc3_gene_level/DLBC_mc3_gene_level.txt"
#> [224] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/DLBC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [225] "survival/DLBC_survival.txt"
#> [226] "TCGA.PRAD.sampleMap/HumanMethylation450"
#> [227] "TCGA.PRAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [228] "TCGA.PRAD.sampleMap/HiSeqV2_percentile"
#> [229] "TCGA.PRAD.sampleMap/HiSeqV2_PANCAN"
#> [230] "TCGA.PRAD.sampleMap/HiSeqV2"
#> [231] "TCGA.PRAD.sampleMap/PRAD_clinicalMatrix"
#> [232] "TCGA.PRAD.sampleMap/SNP6_nocnv_genomicSegment"
#> [233] "TCGA.PRAD.sampleMap/miRNA_HiSeq_gene"
#> [234] "TCGA.PRAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [235] "TCGA.PRAD.sampleMap/RPPA"
#> [236] "TCGA.PRAD.sampleMap/SNP6_genomicSegment"
#> [237] "TCGA.PRAD.sampleMap/HiSeqV2_exon"
#> [238] "RABIT/separate_processed/RABIT_PRAD.HiSeq.V2"
#> [239] "merge_merged_reals/PRAD_merge_merged_reals.txt"
#> [240] "mc3/PRAD_mc3.txt"
#> [241] "mc3_gene_level/PRAD_mc3_gene_level.txt"
#> [242] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/PRAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [243] "survival/PRAD_survival.txt"
#> [244] "TCGA.LUNG.sampleMap/HumanMethylation27"
#> [245] "TCGA.LUNG.sampleMap/HumanMethylation450"
#> [246] "TCGA.LUNG.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [247] "TCGA.LUNG.sampleMap/RPPA_RBN"
#> [248] "TCGA.LUNG.sampleMap/HiSeqV2_PANCAN"
#> [249] "TCGA.LUNG.sampleMap/HiSeqV2"
#> [250] "TCGA.LUNG.sampleMap/SNP6_nocnv_genomicSegment"
#> [251] "TCGA.LUNG.sampleMap/LUNG_clinicalMatrix"
#> [252] "TCGA.LUNG.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [253] "TCGA.LUNG.sampleMap/SNP6_genomicSegment"
#> [254] "TCGA.LUNG.sampleMap/HiSeqV2_exon"
#> [255] "TCGA.LUNG.sampleMap/AgilentG4502A_07_3"
#> [256] "survival/LUNG_survival.txt"
#> [257] "mc3/LUNG_mc3.txt"
#> [258] "mc3_gene_level/LUNG_mc3_gene_level.txt"
#> [259] "RABIT/separate_processed/RABIT_LIHC.HiSeq"
#> [260] "RABIT/separate_processed/RABIT_LIHC.HiSeq.V2"
#> [261] "TCGA.LIHC.sampleMap/HumanMethylation450"
#> [262] "TCGA.LIHC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [263] "TCGA.LIHC.sampleMap/HiSeqV2_percentile"
#> [264] "TCGA.LIHC.sampleMap/HiSeqV2_PANCAN"
#> [265] "TCGA.LIHC.sampleMap/HiSeqV2"
#> [266] "TCGA.LIHC.sampleMap/SNP6_nocnv_genomicSegment"
#> [267] "TCGA.LIHC.sampleMap/miRNA_HiSeq_gene"
#> [268] "TCGA.LIHC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [269] "TCGA.LIHC.sampleMap/RPPA"
#> [270] "TCGA.LIHC.sampleMap/LIHC_clinicalMatrix"
#> [271] "TCGA.LIHC.sampleMap/SNP6_genomicSegment"
#> [272] "TCGA.LIHC.sampleMap/HiSeqV2_exon"
#> [273] "merge_merged_reals/LIHC_merge_merged_reals.txt"
#> [274] "mc3/LIHC_mc3.txt"
#> [275] "mc3_gene_level/LIHC_mc3_gene_level.txt"
#> [276] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LIHC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [277] "survival/LIHC_survival.txt"
#> [278] "RABIT/separate_processed/RABIT_KICH.HiSeq.V2"
#> [279] "TCGA.KICH.sampleMap/HumanMethylation450"
#> [280] "TCGA.KICH.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [281] "TCGA.KICH.sampleMap/HiSeqV2_percentile"
#> [282] "TCGA.KICH.sampleMap/KICH_clinicalMatrix"
#> [283] "TCGA.KICH.sampleMap/HiSeqV2_PANCAN"
#> [284] "TCGA.KICH.sampleMap/HiSeqV2"
#> [285] "TCGA.KICH.sampleMap/SNP6_nocnv_genomicSegment"
#> [286] "TCGA.KICH.sampleMap/miRNA_HiSeq_gene"
#> [287] "TCGA.KICH.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [288] "TCGA.KICH.sampleMap/RPPA"
#> [289] "TCGA.KICH.sampleMap/SNP6_genomicSegment"
#> [290] "TCGA.KICH.sampleMap/HiSeqV2_exon"
#> [291] "merge_merged_reals/KICH_merge_merged_reals.txt"
#> [292] "mc3/KICH_mc3.txt"
#> [293] "mc3_gene_level/KICH_mc3_gene_level.txt"
#> [294] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/KICH_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [295] "survival/KICH_survival.txt"
#> [296] "RABIT/separate_processed/RABIT_HNSC.HiSeq"
#> [297] "RABIT/separate_processed/RABIT_HNSC.HiSeq.V2"
#> [298] "TCGA.HNSC.sampleMap/HumanMethylation450"
#> [299] "TCGA.HNSC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [300] "TCGA.HNSC.sampleMap/RPPA_RBN"
#> [301] "TCGA.HNSC.sampleMap/HiSeqV2_percentile"
#> [302] "TCGA.HNSC.sampleMap/miRNA_GA_gene"
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#> [304] "TCGA.HNSC.sampleMap/HiSeqV2"
#> [305] "TCGA.HNSC.sampleMap/SNP6_nocnv_genomicSegment"
#> [306] "TCGA.HNSC.sampleMap/miRNA_HiSeq_gene"
#> [307] "TCGA.HNSC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [308] "TCGA.HNSC.sampleMap/RPPA"
#> [309] "TCGA.HNSC.sampleMap/SNP6_genomicSegment"
#> [310] "TCGA.HNSC.sampleMap/HiSeqV2_exon"
#> [311] "TCGA.HNSC.sampleMap/HNSC_clinicalMatrix"
#> [312] "merge_merged_reals/HNSC_merge_merged_reals.txt"
#> [313] "mc3/HNSC_mc3.txt"
#> [314] "mc3_gene_level/HNSC_mc3_gene_level.txt"
#> [315] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/HNSC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [316] "survival/HNSC_survival.txt"
#> [317] "TCGA.PCPG.sampleMap/HumanMethylation450"
#> [318] "TCGA.PCPG.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [319] "TCGA.PCPG.sampleMap/HiSeqV2_percentile"
#> [320] "TCGA.PCPG.sampleMap/HiSeqV2_PANCAN"
#> [321] "TCGA.PCPG.sampleMap/HiSeqV2"
#> [322] "TCGA.PCPG.sampleMap/SNP6_nocnv_genomicSegment"
#> [323] "TCGA.PCPG.sampleMap/miRNA_HiSeq_gene"
#> [324] "TCGA.PCPG.sampleMap/PCPG_clinicalMatrix"
#> [325] "TCGA.PCPG.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [326] "TCGA.PCPG.sampleMap/RPPA"
#> [327] "TCGA.PCPG.sampleMap/SNP6_genomicSegment"
#> [328] "TCGA.PCPG.sampleMap/HiSeqV2_exon"
#> [329] "merge_merged_reals/PCPG_merge_merged_reals.txt"
#> [330] "mc3/PCPG_mc3.txt"
#> [331] "mc3_gene_level/PCPG_mc3_gene_level.txt"
#> [332] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/PCPG_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [333] "survival/PCPG_survival.txt"
#> [334] "TCGA.ESCA.sampleMap/HumanMethylation450"
#> [335] "TCGA.ESCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [336] "TCGA.ESCA.sampleMap/HiSeqV2_percentile"
#> [337] "TCGA.ESCA.sampleMap/HiSeqV2_PANCAN"
#> [338] "TCGA.ESCA.sampleMap/HiSeqV2"
#> [339] "TCGA.ESCA.sampleMap/HiSeq"
#> [340] "TCGA.ESCA.sampleMap/SNP6_nocnv_genomicSegment"
#> [341] "TCGA.ESCA.sampleMap/miRNA_HiSeq_gene"
#> [342] "TCGA.ESCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [343] "TCGA.ESCA.sampleMap/HiSeq_exon"
#> [344] "TCGA.ESCA.sampleMap/RPPA"
#> [345] "TCGA.ESCA.sampleMap/SNP6_genomicSegment"
#> [346] "TCGA.ESCA.sampleMap/HiSeqV2_exon"
#> [347] "TCGA.ESCA.sampleMap/ESCA_clinicalMatrix"
#> [348] "merge_merged_reals/ESCA_merge_merged_reals.txt"
#> [349] "mc3/ESCA_mc3.txt"
#> [350] "mc3_gene_level/ESCA_mc3_gene_level.txt"
#> [351] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/ESCA_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [352] "survival/ESCA_survival.txt"
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#> [354] "TCGA.THCA.sampleMap/HumanMethylation450"
#> [355] "TCGA.THCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [356] "TCGA.THCA.sampleMap/HiSeqV2_percentile"
#> [357] "TCGA.THCA.sampleMap/HiSeqV2_PANCAN"
#> [358] "TCGA.THCA.sampleMap/HiSeqV2"
#> [359] "TCGA.THCA.sampleMap/mutation_broad_gene"
#> [360] "TCGA.THCA.sampleMap/SNP6_nocnv_genomicSegment"
#> [361] "TCGA.THCA.sampleMap/miRNA_HiSeq_gene"
#> [362] "TCGA.THCA.sampleMap/THCA_clinicalMatrix"
#> [363] "TCGA.THCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [364] "TCGA.THCA.sampleMap/RPPA"
#> [365] "TCGA.THCA.sampleMap/SNP6_genomicSegment"
#> [366] "TCGA.THCA.sampleMap/HiSeqV2_exon"
#> [367] "merge_merged_reals/THCA_merge_merged_reals.txt"
#> [368] "mc3/THCA_mc3.txt"
#> [369] "mc3_gene_level/THCA_mc3_gene_level.txt"
#> [370] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/THCA_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [371] "survival/THCA_survival.txt"
#> [372] "RABIT/separate_processed/RABIT_LUAD.HiSeq.V2"
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#> [375] "TCGA.LUAD.sampleMap/HumanMethylation450"
#> [376] "TCGA.LUAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
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#> [381] "TCGA.LUAD.sampleMap/HiSeqV2"
#> [382] "TCGA.LUAD.sampleMap/SNP6_nocnv_genomicSegment"
#> [383] "TCGA.LUAD.sampleMap/miRNA_HiSeq_gene"
#> [384] "TCGA.LUAD.sampleMap/LUAD_clinicalMatrix"
#> [385] "TCGA.LUAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
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#> [387] "TCGA.LUAD.sampleMap/SNP6_genomicSegment"
#> [388] "TCGA.LUAD.sampleMap/AgilentG4502A_07_3"
#> [389] "TCGA.LUAD.sampleMap/HiSeqV2_exon"
#> [390] "merge_merged_reals/LUAD_merge_merged_reals.txt"
#> [391] "mc3/LUAD_mc3.txt"
#> [392] "mc3_gene_level/LUAD_mc3_gene_level.txt"
#> [393] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LUAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [394] "survival/LUAD_survival.txt"
#> [395] "TCGA.LAML.sampleMap/HumanMethylation27"
#> [396] "TCGA.LAML.sampleMap/HumanMethylation450"
#> [397] "TCGA.LAML.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [398] "TCGA.LAML.sampleMap/GA"
#> [399] "TCGA.LAML.sampleMap/HiSeqV2_percentile"
#> [400] "TCGA.LAML.sampleMap/miRNA_GA_gene"
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#> [402] "TCGA.LAML.sampleMap/HiSeqV2"
#> [403] "TCGA.LAML.sampleMap/SNP6_nocnv_genomicSegment"
#> [404] "TCGA.LAML.sampleMap/GA_exon"
#> [405] "TCGA.LAML.sampleMap/LAML_clinicalMatrix"
#> [406] "TCGA.LAML.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [407] "TCGA.LAML.sampleMap/SNP6_genomicSegment"
#> [408] "TCGA.LAML.sampleMap/HiSeqV2_exon"
#> [409] "merge_merged_reals/LAML_merge_merged_reals.txt"
#> [410] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LAML_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [411] "survival/LAML_survival.txt"
#> [412] "TCGA.LAML.sampleMap/mutation_wustl"
#> [413] "TCGA.LAML.sampleMap/mutation_wustl_gene"
#> [414] "RABIT/separate_processed/RABIT_BLCA.HiSeq.V2"
#> [415] "RABIT/separate_processed/RABIT_BLCA.HiSeq"
#> [416] "TCGA.BLCA.sampleMap/HumanMethylation450"
#> [417] "TCGA.BLCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [418] "TCGA.BLCA.sampleMap/RPPA_RBN"
#> [419] "TCGA.BLCA.sampleMap/HiSeqV2_percentile"
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#> [422] "TCGA.BLCA.sampleMap/HiSeqV2"
#> [423] "TCGA.BLCA.sampleMap/SNP6_nocnv_genomicSegment"
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#> [425] "TCGA.BLCA.sampleMap/BLCA_clinicalMatrix"
#> [426] "TCGA.BLCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [427] "TCGA.BLCA.sampleMap/RPPA"
#> [428] "TCGA.BLCA.sampleMap/SNP6_genomicSegment"
#> [429] "TCGA.BLCA.sampleMap/HiSeqV2_exon"
#> [430] "merge_merged_reals/BLCA_merge_merged_reals.txt"
#> [431] "mc3/BLCA_mc3.txt"
#> [432] "mc3_gene_level/BLCA_mc3_gene_level.txt"
#> [433] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/BLCA_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [434] "survival/BLCA_survival.txt"
#> [435] "TCGA.SKCM.sampleMap/HumanMethylation450"
#> [436] "TCGA.SKCM.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [437] "TCGA.SKCM.sampleMap/HiSeqV2_percentile"
#> [438] "TCGA.SKCM.sampleMap/HiSeqV2_PANCAN"
#> [439] "TCGA.SKCM.sampleMap/HiSeqV2"
#> [440] "TCGA.SKCM.sampleMap/SNP6_nocnv_genomicSegment"
#> [441] "TCGA.SKCM.sampleMap/miRNA_HiSeq_gene"
#> [442] "TCGA.SKCM.sampleMap/SKCM_clinicalMatrix"
#> [443] "TCGA.SKCM.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [444] "TCGA.SKCM.sampleMap/RPPA"
#> [445] "TCGA.SKCM.sampleMap/SNP6_genomicSegment"
#> [446] "TCGA.SKCM.sampleMap/HiSeqV2_exon"
#> [447] "merge_merged_reals/SKCM_merge_merged_reals.txt"
#> [448] "mc3/SKCM_mc3.txt"
#> [449] "mc3_gene_level/SKCM_mc3_gene_level.txt"
#> [450] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/SKCM_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [451] "survival/SKCM_survival.txt"
#> [452] "TCGA.LUSC.sampleMap/HumanMethylation27"
#> [453] "TCGA.LUSC.sampleMap/HumanMethylation450"
#> [454] "TCGA.LUSC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [455] "TCGA.LUSC.sampleMap/RPPA_RBN"
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#> [457] "TCGA.LUSC.sampleMap/HiSeqV2_percentile"
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#> [460] "TCGA.LUSC.sampleMap/HiSeqV2"
#> [461] "TCGA.LUSC.sampleMap/LUSC_clinicalMatrix"
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#> [463] "TCGA.LUSC.sampleMap/miRNA_HiSeq_gene"
#> [464] "TCGA.LUSC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
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#> [467] "TCGA.LUSC.sampleMap/HiSeqV2_exon"
#> [468] "TCGA.LUSC.sampleMap/AgilentG4502A_07_3"
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#> [470] "RABIT/separate_processed/RABIT_LUSC.HiSeq.V2"
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#> [472] "mc3/LUSC_mc3.txt"
#> [473] "mc3_gene_level/LUSC_mc3_gene_level.txt"
#> [474] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/LUSC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [475] "survival/LUSC_survival.txt"
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#> [477] "TCGA.TGCT.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [478] "TCGA.TGCT.sampleMap/HiSeqV2_percentile"
#> [479] "TCGA.TGCT.sampleMap/HiSeqV2_PANCAN"
#> [480] "TCGA.TGCT.sampleMap/HiSeqV2"
#> [481] "TCGA.TGCT.sampleMap/SNP6_nocnv_genomicSegment"
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#> [487] "TCGA.TGCT.sampleMap/HiSeqV2_exon"
#> [488] "merge_merged_reals/TGCT_merge_merged_reals.txt"
#> [489] "mc3/TGCT_mc3.txt"
#> [490] "mc3_gene_level/TGCT_mc3_gene_level.txt"
#> [491] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/TGCT_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [492] "survival/TGCT_survival.txt"
#> [493] "TCGA.PAAD.sampleMap/HumanMethylation450"
#> [494] "TCGA.PAAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [495] "TCGA.PAAD.sampleMap/HiSeqV2_percentile"
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#> [497] "TCGA.PAAD.sampleMap/HiSeqV2"
#> [498] "TCGA.PAAD.sampleMap/SNP6_nocnv_genomicSegment"
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#> [504] "TCGA.PAAD.sampleMap/HiSeqV2_exon"
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#> [506] "mc3/PAAD_mc3.txt"
#> [507] "mc3_gene_level/PAAD_mc3_gene_level.txt"
#> [508] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/PAAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
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#> [515] "TCGA.GBM.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
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#> [520] "TCGA.GBM.sampleMap/HiSeqV2"
#> [521] "TCGA.GBM.sampleMap/SNP6_nocnv_genomicSegment"
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#> [525] "TCGA.GBM.sampleMap/AgilentG4502A_07_1"
#> [526] "TCGA.GBM.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
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#> [528] "TCGA.GBM.sampleMap/SNP6_genomicSegment"
#> [529] "TCGA.GBM.sampleMap/HiSeqV2_exon"
#> [530] "merge_merged_reals/GBM_merge_merged_reals.txt"
#> [531] "mc3/GBM_mc3.txt"
#> [532] "mc3_gene_level/GBM_mc3_gene_level.txt"
#> [533] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/GBM_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [534] "survival/GBM_survival.txt"
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#> [537] "TCGA.STAD.sampleMap/HumanMethylation450"
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#> [543] "TCGA.STAD.sampleMap/HiSeqV2"
#> [544] "TCGA.STAD.sampleMap/HiSeq"
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#> [546] "TCGA.STAD.sampleMap/miRNA_HiSeq_gene"
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#> [548] "TCGA.STAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
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#> [552] "TCGA.STAD.sampleMap/HiSeqV2_exon"
#> [553] "TCGA.STAD.sampleMap/STAD_clinicalMatrix"
#> [554] "merge_merged_reals/STAD_merge_merged_reals.txt"
#> [555] "mc3/STAD_mc3.txt"
#> [556] "mc3_gene_level/STAD_mc3_gene_level.txt"
#> [557] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/STAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [558] "survival/STAD_survival.txt"
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#> [560] "TCGA.MESO.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [561] "TCGA.MESO.sampleMap/HiSeqV2_percentile"
#> [562] "TCGA.MESO.sampleMap/HiSeqV2_PANCAN"
#> [563] "TCGA.MESO.sampleMap/HiSeqV2"
#> [564] "TCGA.MESO.sampleMap/SNP6_nocnv_genomicSegment"
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#> [569] "TCGA.MESO.sampleMap/HiSeqV2_exon"
#> [570] "TCGA.MESO.sampleMap/MESO_clinicalMatrix"
#> [571] "merge_merged_reals/MESO_merge_merged_reals.txt"
#> [572] "mc3/MESO_mc3.txt"
#> [573] "mc3_gene_level/MESO_mc3_gene_level.txt"
#> [574] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/MESO_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [575] "survival/MESO_survival.txt"
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#> [577] "TCGA.UVM.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [578] "TCGA.UVM.sampleMap/HiSeqV2_percentile"
#> [579] "TCGA.UVM.sampleMap/HiSeqV2_PANCAN"
#> [580] "TCGA.UVM.sampleMap/HiSeqV2"
#> [581] "TCGA.UVM.sampleMap/SNP6_nocnv_genomicSegment"
#> [582] "TCGA.UVM.sampleMap/miRNA_HiSeq_gene"
#> [583] "TCGA.UVM.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [584] "TCGA.UVM.sampleMap/RPPA"
#> [585] "TCGA.UVM.sampleMap/SNP6_genomicSegment"
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#> [587] "TCGA.UVM.sampleMap/HiSeqV2_exon"
#> [588] "merge_merged_reals/UVM_merge_merged_reals.txt"
#> [589] "mc3/UVM_mc3.txt"
#> [590] "mc3_gene_level/UVM_mc3_gene_level.txt"
#> [591] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/UVM_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [592] "survival/UVM_survival.txt"
#> [593] "TCGA.GBMLGG.sampleMap/HumanMethylation450"
#> [594] "TCGA.GBMLGG.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [595] "TCGA.GBMLGG.sampleMap/HiSeqV2_PANCAN"
#> [596] "TCGA.GBMLGG.sampleMap/HiSeqV2"
#> [597] "TCGA.GBMLGG.sampleMap/SNP6_nocnv_genomicSegment"
#> [598] "TCGA.GBMLGG.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [599] "TCGA.GBMLGG.sampleMap/GBMLGG_clinicalMatrix"
#> [600] "TCGA.GBMLGG.sampleMap/SNP6_genomicSegment"
#> [601] "TCGA.GBMLGG.sampleMap/HiSeqV2_exon"
#> [602] "survival/GBMLGG_survival.txt"
#> [603] "mc3/GBMLGG_mc3.txt"
#> [604] "mc3_gene_level/GBMLGG_mc3_gene_level.txt"
#> [605] "TCGA.THYM.sampleMap/HumanMethylation450"
#> [606] "TCGA.THYM.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [607] "TCGA.THYM.sampleMap/HiSeqV2_percentile"
#> [608] "TCGA.THYM.sampleMap/HiSeqV2_PANCAN"
#> [609] "TCGA.THYM.sampleMap/HiSeqV2"
#> [610] "TCGA.THYM.sampleMap/SNP6_nocnv_genomicSegment"
#> [611] "TCGA.THYM.sampleMap/miRNA_HiSeq_gene"
#> [612] "TCGA.THYM.sampleMap/THYM_clinicalMatrix"
#> [613] "TCGA.THYM.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [614] "TCGA.THYM.sampleMap/RPPA"
#> [615] "TCGA.THYM.sampleMap/SNP6_genomicSegment"
#> [616] "TCGA.THYM.sampleMap/HiSeqV2_exon"
#> [617] "merge_merged_reals/THYM_merge_merged_reals.txt"
#> [618] "mc3/THYM_mc3.txt"
#> [619] "mc3_gene_level/THYM_mc3_gene_level.txt"
#> [620] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/THYM_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [621] "survival/THYM_survival.txt"
#> [622] "RABIT/separate_processed/RABIT_UCEC.GA.V2"
#> [623] "RABIT/separate_processed/RABIT_UCEC.GA"
#> [624] "RABIT/separate_processed/RABIT_UCEC.HiSeq.V2"
#> [625] "TCGA.UCEC.sampleMap/HumanMethylation27"
#> [626] "TCGA.UCEC.sampleMap/GAV2"
#> [627] "TCGA.UCEC.sampleMap/HumanMethylation450"
#> [628] "TCGA.UCEC.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [629] "TCGA.UCEC.sampleMap/RPPA_RBN"
#> [630] "TCGA.UCEC.sampleMap/HiSeqV2_percentile"
#> [631] "TCGA.UCEC.sampleMap/miRNA_GA_gene"
#> [632] "TCGA.UCEC.sampleMap/HiSeqV2_PANCAN"
#> [633] "TCGA.UCEC.sampleMap/HiSeqV2"
#> [634] "TCGA.UCEC.sampleMap/SNP6_nocnv_genomicSegment"
#> [635] "TCGA.UCEC.sampleMap/miRNA_HiSeq_gene"
#> [636] "TCGA.UCEC.sampleMap/GAV2_exon"
#> [637] "TCGA.UCEC.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [638] "TCGA.UCEC.sampleMap/RPPA"
#> [639] "TCGA.UCEC.sampleMap/UCEC_clinicalMatrix"
#> [640] "TCGA.UCEC.sampleMap/SNP6_genomicSegment"
#> [641] "TCGA.UCEC.sampleMap/HiSeqV2_exon"
#> [642] "TCGA.UCEC.sampleMap/AgilentG4502A_07_3"
#> [643] "merge_merged_reals/UCEC_merge_merged_reals.txt"
#> [644] "mc3/UCEC_mc3.txt"
#> [645] "mc3_gene_level/UCEC_mc3_gene_level.txt"
#> [646] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/UCEC_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [647] "survival/UCEC_survival.txt"
#> [648] "RABIT/separate_processed/RABIT_BRCA.HiSeq"
#> [649] "RABIT/separate_processed/RABIT_BRCA.Agilent"
#> [650] "RABIT/separate_processed/RABIT_BRCA.HiSeq.V2"
#> [651] "TCGA.BRCA.sampleMap/HumanMethylation27"
#> [652] "TCGA.BRCA.sampleMap/HumanMethylation450"
#> [653] "TCGA.BRCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [654] "TCGA.BRCA.sampleMap/RPPA_RBN"
#> [655] "TCGA.BRCA.sampleMap/HiSeqV2_percentile"
#> [656] "TCGA.BRCA.sampleMap/miRNA_GA_gene"
#> [657] "TCGA.BRCA.sampleMap/HiSeqV2_PANCAN"
#> [658] "TCGA.BRCA.sampleMap/HiSeqV2"
#> [659] "TCGA.BRCA.sampleMap/SNP6_nocnv_genomicSegment"
#> [660] "TCGA.BRCA.sampleMap/miRNA_HiSeq_gene"
#> [661] "TCGA.BRCA.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [662] "TCGA.BRCA.sampleMap/RPPA"
#> [663] "TCGA.BRCA.sampleMap/SNP6_genomicSegment"
#> [664] "TCGA.BRCA.sampleMap/BRCA_clinicalMatrix"
#> [665] "TCGA.BRCA.sampleMap/HiSeqV2_exon"
#> [666] "TCGA.BRCA.sampleMap/AgilentG4502A_07_3"
#> [667] "merge_merged_reals/BRCA_merge_merged_reals.txt"
#> [668] "mc3/BRCA_mc3.txt"
#> [669] "mc3_gene_level/BRCA_mc3_gene_level.txt"
#> [670] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/BRCA_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [671] "survival/BRCA_survival.txt"
#> [672] "TCGA.UCS.sampleMap/HumanMethylation450"
#> [673] "TCGA.UCS.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [674] "TCGA.UCS.sampleMap/HiSeqV2_percentile"
#> [675] "TCGA.UCS.sampleMap/HiSeqV2_PANCAN"
#> [676] "TCGA.UCS.sampleMap/HiSeqV2"
#> [677] "TCGA.UCS.sampleMap/SNP6_nocnv_genomicSegment"
#> [678] "TCGA.UCS.sampleMap/miRNA_HiSeq_gene"
#> [679] "TCGA.UCS.sampleMap/UCS_clinicalMatrix"
#> [680] "TCGA.UCS.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [681] "TCGA.UCS.sampleMap/RPPA"
#> [682] "TCGA.UCS.sampleMap/SNP6_genomicSegment"
#> [683] "TCGA.UCS.sampleMap/HiSeqV2_exon"
#> [684] "merge_merged_reals/UCS_merge_merged_reals.txt"
#> [685] "mc3/UCS_mc3.txt"
#> [686] "mc3_gene_level/UCS_mc3_gene_level.txt"
#> [687] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/UCS_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [688] "survival/UCS_survival.txt"
#> [689] "TCGA.COAD.sampleMap/HumanMethylation27"
#> [690] "TCGA.COAD.sampleMap/GAV2"
#> [691] "TCGA.COAD.sampleMap/HumanMethylation450"
#> [692] "TCGA.COAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_data_by_genes"
#> [693] "TCGA.COAD.sampleMap/RPPA_RBN"
#> [694] "TCGA.COAD.sampleMap/HiSeqV2_percentile"
#> [695] "TCGA.COAD.sampleMap/miRNA_GA_gene"
#> [696] "TCGA.COAD.sampleMap/HiSeqV2_PANCAN"
#> [697] "TCGA.COAD.sampleMap/HiSeqV2"
#> [698] "TCGA.COAD.sampleMap/COAD_clinicalMatrix"
#> [699] "TCGA.COAD.sampleMap/SNP6_nocnv_genomicSegment"
#> [700] "TCGA.COAD.sampleMap/miRNA_HiSeq_gene"
#> [701] "TCGA.COAD.sampleMap/GAV2_exon"
#> [702] "TCGA.COAD.sampleMap/Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes"
#> [703] "TCGA.COAD.sampleMap/RPPA"
#> [704] "TCGA.COAD.sampleMap/SNP6_genomicSegment"
#> [705] "TCGA.COAD.sampleMap/HiSeqV2_exon"
#> [706] "TCGA.COAD.sampleMap/AgilentG4502A_07_3"
#> [707] "RABIT/separate_processed/RABIT_COAD.Agilent"
#> [708] "RABIT/separate_processed/RABIT_COAD.HiSeq.V2"
#> [709] "merge_merged_reals/COAD_merge_merged_reals.txt"
#> [710] "mc3/COAD_mc3.txt"
#> [711] "mc3_gene_level/COAD_mc3_gene_level.txt"
#> [712] "PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z/COAD_PanCan33_ssGSEA_1387GeneSets_NonZero_sample_level_Z.txt"
#> [713] "survival/COAD_survival.txt"
#> [714] "TCGA.FPPP.sampleMap/miRNA_HiSeq_gene"
#> [715] "TCGA.FPPP.sampleMap/FPPP_clinicalMatrix"