It is used to generate original
XenaHub
object according to hosts, cohorts, datasets or hostName.
If these arguments not specified, all hosts and corresponding datasets
will be returned as a XenaHub
object. All datasets can be found
at https://xenabrowser.net/datapages/.
Usage
XenaHub(
hosts = xena_default_hosts(),
cohorts = character(),
datasets = character(),
hostName = c("publicHub", "tcgaHub", "gdcHub", "icgcHub", "toilHub", "pancanAtlasHub",
"treehouseHub", "pcawgHub", "atacseqHub", "singlecellHub", "kidsfirstHub")
)
Arguments
- hosts
a character vector specify UCSC Xena hosts, all available hosts can be found by
xena_default_hosts()
function.hostName
is a more recommend option.- cohorts
default is empty character vector, all cohorts will be returned.
- datasets
default is empty character vector, all datasets will be returned.
- hostName
name of host, available options can be accessed by
.xena_hosts
This is an easier option for user thanhosts
option. Note, this option will overlaphosts
.
Author
Shixiang Wang [email protected]