Create an inference model to measure the evidence of.Source:
Create an inference model to measure the evidence of. To do so, the inference model is created as usual (see create_inference_model), except for using a Nested Sampling MCMC (see create_ns_mcmc)
create_ns_inference_model( site_model = beautier::create_jc69_site_model(), clock_model = beautier::create_strict_clock_model(), tree_prior = beautier::create_yule_tree_prior(), mcmc = beautier::create_ns_mcmc() )
a site model, as returned by
a clock model, as returned by
a tree priors, as returned by
one MCMC. Use
create_mcmcto create an MCMC. Use
create_ns_mcmcto create an MCMC for a Nested Sampling run. Use
check_mcmcto check if an MCMC is valid. Use
rename_mcmc_filenamesto rename the filenames in an MCMC.
Use create_inference_model to create a regular inference model. Use create_test_ns_inference_model to create an inference model to estimate the marginal likelihood with a short MCMC, to be used in testing.
check_empty_beautier_folder() inference_model <- create_ns_inference_model() check_empty_beautier_folder()