Package index • cRegulome

All functions

cRegulome: cRegulome package

cTF(): Construct cTF object

cmicroRNA(): Construct cmicroRNA object

cor_hist(): A histogram of the correlations of microRNA or tf sets

cor_igraph(): Make an igraph object

cor_joy(): A joy plot of correlation of microRNA or tf sets

cor_plot(): Plot method for cmicroRNA and cTF objects

cor_prep(): Prepare correlation data for plotting

cor_tidy(): Tidy cmicroRNA and cTF objects

cor_upset(): upset plot of microRNA or tf sets

cor_venn_diagram(): Venn Diagram of microRNA or transcription factor correlated features

get_db(): Get cRegulome.db file

get_mir(): Get microRNA correlations from cRegulome.db

get_tf(): Get transcription factor correlations from cRegulome.db

stat_collect(): Collect data from SQLite database

stat_collect_targets(): Collect target features from SQLite database

stat_make(): Make A SQL statement

stat_make_targets(): Make A SQL statement to extract target features