Output of analyzing test data with Biodiverse.
Format
A tibble (dataframe) with 127 rows and 7 columns. Columns include:
- site
Site name; corresponds to row names of
biod_example$comm- pd_biodiv
Phylogenetic diversity (PD;
PD_Pin Biodiverse)- pd_alt_biodiv
Alternative PD (PD measured on tree with all branchlengths equal;
PHYLO_RPD_NULL2in Biodiverse)- rpd_biodiv
Relative PD (PD divided by alternative PD;
PHYLO_RPD_NULL2in Biodiverse)- pe_biodiv
Phylogenetic endemism (PE;
PE_WE_Pin Biodiverse)- pe_alt_biodiv
Alternative PE (PE measured on tree with all branchlengths equal;
PHYLO_RPE_NULL2in Biodiverse)- rpe_biodiv
Relative PE (PE divided by alternative PD;
PHYLO_RPE2in Biodiverse)
Details
The example_project.bps # nolint
example data set was used as input,which corresponds to the
biod_example dataset in this package.
For a description of all Biodiverse metrics, see the Biodiverse wiki. # nolint
References
Laffan, S.W., Lubarsky, E. & Rosauer, D.F. (2010) Biodiverse, a tool for the spatial analysis of biological and related diversity. Ecography. Vol 33, 643-647 (Version 3.1). doi:10.1111/j.1600-0587.2010.06237.x
Examples
biod_results
#> # A tibble: 127 × 7
#> site pd_biodiv pd_alt_biodiv rpd_biodiv pe_biodiv pe_alt_biodiv rpe_biodiv
#> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 195000… 0.0469 0.0690 0.680 0.00661 0.00290 2.28
#> 2 195000… 0.0469 0.0690 0.680 0.00661 0.00290 2.28
#> 3 205000… 0.0931 0.172 0.540 0.00833 0.00504 1.65
#> 4 205000… 0.0469 0.0690 0.680 0.00661 0.00290 2.28
#> 5 215000… 0.0469 0.155 0.302 0.00146 0.00236 0.620
#> 6 215000… 0.0683 0.172 0.396 0.00259 0.00327 0.793
#> 7 215000… 0.0931 0.172 0.540 0.00833 0.00504 1.65
#> 8 225000… 0.0469 0.155 0.302 0.00173 0.00258 0.673
#> 9 225000… 0.0931 0.172 0.540 0.00806 0.00482 1.67
#> 10 225000… 0.182 0.276 0.659 0.0109 0.00755 1.45
#> # ℹ 117 more rows